RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CYB5BO43169 146 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 CHST10O43529 356 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 TPST1O60507 370 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 KCNK2O95069 426 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 GADD45GO95257 159 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 OR12D1P0DN82 309 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 GADD45AP24522 165 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 NPY1RP25929 384 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 UBE2AP49459 152 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 ZNF138P52744 262 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 GFERP55789 205 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 SNRPD2P62316 118 aaKnown RBP1.85□□□□□ -2.11
VPS41-213ENST00000485955 GNG5P63218 68 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 FABP5Q01469 135 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 OR8B8Q15620 311 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 KRTAP21-3Q3LHN1 58 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 C6orf99Q4VX62 202 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 ATP6AP1LQ52LC2 224 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 MESTQ5EB52 335 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 AKR1C8PQ5T2L2 129 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 PRR9Q5T870 116 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 ZFAND6Q6FIF0 208 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 LCN8Q6JVE9 175 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 FBXW12Q6X9E4 464 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 STRADAQ7RTN6 431 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 C20orf196Q8IYI0 205 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 TMEM105Q8N8V8 129 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 C15orf56Q8N910 161 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 GDPD1Q8N9F7 314 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 OR11H6Q8NGC7 330 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 OR4S2Q8NH73 311 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 RXFP4Q8TDU9 374 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 GALMQ96C23 342 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 ROPN1LQ96C74 230 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 GPR146Q96CH1 333 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 FXYD5Q96DB9 178 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 NEURL3Q96EH8 262 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 REEP6Q96HR9 211 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 CNBD2Q96M20 576 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 CCDC115Q96NT0 180 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 RNF157Q96PX1 679 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 LINC01587Q99440 93 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 SERPINI1Q99574 410 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 KLF6Q99612 283 aaPredicted RBP1.85□□□□□ -2.11
VPS41-213ENST00000485955 PRSS27Q9BQR3 290 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 HSPB9Q9BQS6 159 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 OR52D1Q9H346 318 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 NOX3Q9HBY0 568 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 HES4Q9HCC6 221 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 SLCO1B3Q9NPD5 702 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 PARP11Q9NR21 331 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 PRTFDC1Q9NRG1 225 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 FAM49BQ9NUQ9 324 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 ZNF222Q9UK12 451 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 SSR3Q9UNL2 185 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 HES2Q9Y543 173 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 RBM7Q9Y580 266 aaKnown RBP1.85□□□□□ -2.11
VPS41-213ENST00000485955 F11RQ9Y624 299 aaKnown RBP1.85□□□□□ -2.11
VPS41-213ENST00000485955 CENPEQ02224 2701 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 ANKHD1Q8IWZ3 2542 aaKnown RBP1.85□□□□□ -2.11
VPS41-213ENST00000485955 SPTBN1Q01082 2364 aaKnown RBP1.85□□□□□ -2.11
VPS41-213ENST00000485955 UBR4Q5T4S7 5183 aa1.85□□□□□ -2.11
VPS41-213ENST00000485955 COL11A1P12107 1806 aaPredicted RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 TSC2P49815 1807 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 CACNA1EQ15878 2313 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 VWA8A3KMH1 1905 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 PLXNB3Q9ULL4 1909 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 IGKV1-27A0A075B6S5 117 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 A0A087WX48 190 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 BORCS7-ASMTA0A0B4J1R7 106 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 IGHV1-69DA0A0B4J2H0 117 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 A0A1B0GX51 115 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 C9orf170A2RU37 121 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 OR5H14A6NHG9 310 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 INMT-MINDY4F8WBC2 141 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 H7C1C5 153 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 UPK1AO00322 258 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 DEGS1O15121 323 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 ZNF207O43670 478 aaKnown RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 IGF2P01344 180 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 IFNGP01579 166 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 SERPINE1P05121 402 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 UBBP0CG47 229 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 IGHV3-43DP0DP04 118 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 RNASE2P10153 161 aaKnown RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 FGF6P10767 208 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 CPMP14384 443 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 CTLA4P16410 223 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 CCL1P22362 96 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 TALDO1P37837 337 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 HSPA9P38646 679 aaKnown RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 CTBP2P56545 445 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 UBE2NP61088 152 aaKnown RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 NCALDP61601 193 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 LCN6P62502 163 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 EMX2Q04743 252 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 ZNF616Q08AN1 781 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 TMEM267Q0VDI3 215 aaPredicted RBP1.84□□□□□ -2.11
VPS41-213ENST00000485955 C12orf74Q32Q52 190 aa1.84□□□□□ -2.11
VPS41-213ENST00000485955 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms