RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 SIGLEC9Q9Y336 463 aa4.34□□□□□ -1.71
COL17A1-206ENST00000483876 LSM4Q9Y4Z0 139 aaKnown RBP4.34□□□□□ -1.71
COL17A1-206ENST00000483876 RBFOX3A6NFN3 312 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 FAM157AC9JC47 383 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 CYB5BO43169 146 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 ACTL6BO94805 426 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 TOX4O94842 621 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 NDUFA3O95167 84 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 MOSP00540 346 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 RNASE2P10153 161 aaKnown RBP4.33□□□□□ -1.72
COL17A1-206ENST00000483876 RPL29P47914 159 aaKnown RBP4.33□□□□□ -1.72
COL17A1-206ENST00000483876 FHITP49789 147 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 ATP5J2P56134 94 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 LGALS4P56470 323 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 RUNX1Q01196 453 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 CD69Q07108 199 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 ZNF616Q08AN1 781 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 GUK1Q16774 197 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 ACOT6Q3I5F7 207 aaPredicted RBP4.33□□□□□ -1.72
COL17A1-206ENST00000483876 ETFRF1Q6IPR1 90 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 SPSB3Q6PJ21 355 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 TEPPQ6URK8 271 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 CLEC2AQ6UVW9 174 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 RBMS3Q6XE24 437 aaKnown RBP4.33□□□□□ -1.72
COL17A1-206ENST00000483876 VMO1Q7Z5L0 202 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 SVBPQ8N300 66 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 OR1L6Q8NGR2 347 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 OR2T10Q8NGZ9 312 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 FAM213BQ8TBF2 198 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 SUN5Q8TC36 379 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 SFT2D1Q8WV19 159 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 CFHR4Q92496 578 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 RITA1Q96K30 269 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 LINC00052Q96N35 136 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 ACTR3CQ9C0K3 210 aaPredicted RBP4.33□□□□□ -1.72
COL17A1-206ENST00000483876 SLC35B3Q9H1N7 401 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 SLC39A9Q9NUM3 307 aa4.33□□□□□ -1.72
COL17A1-206ENST00000483876 CTXND1A0A1B0GTU2 59 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 UBE2L5PA0A1B0GUS4 154 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 TMEM89A2RUT3 159 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 CGB1A6NKQ9 187 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 SEC14L6B5MCN3 397 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 CORTO00230 105 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 TIMM23O14925 209 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 SLC25A17O43808 307 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 APOC3P02656 99 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 HSPB1P04792 205 aaKnown RBP4.32□□□□□ -1.72
COL17A1-206ENST00000483876 CRYGCP07315 174 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 FAM106CPP0CH98 169 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 SLC25A16P16260 332 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 FGF7P21781 194 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 GATA3P23771 443 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 COX7A1P24310 79 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 BRS3P32247 399 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 PPT1P50897 306 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 PRR20EP86478 221 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 PRR20CP86479 221 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 PRR20DP86480 221 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 PRR20BP86481 221 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 PRR20AP86496 221 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 WT1-ASQ06250 92 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 KHDC3LQ587J8 217 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 SPINK9Q5DT21 86 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 ARSJQ5FYB0 599 aaPredicted RBP4.32□□□□□ -1.72
COL17A1-206ENST00000483876 ZNF506Q5JVG8 444 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 LDLRAD2Q5SZI1 272 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 SHISA2Q6UWI4 295 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 ZNF562Q6V9R5 426 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 RPP25LQ8N5L8 163 aaKnown RBP4.32□□□□□ -1.72
COL17A1-206ENST00000483876 Q8N6K4 173 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 OR10G9Q8NGN4 311 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 OR10G7Q8NGN6 311 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 OR1P1Q8NH06 330 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 TBX15Q96SF7 602 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 P2RX4Q99571 388 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 TXNDC17Q9BRA2 123 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 RSG1Q9BU20 258 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 HINT2Q9BX68 163 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 TREM1Q9NP99 234 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 SIRT7Q9NRC8 400 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 C1RLQ9NZP8 487 aa4.32□□□□□ -1.72
COL17A1-206ENST00000483876 IGLC7A0M8Q6 106 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 SMCO3A2RU48 225 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 B4DSR2 109 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 E7EUB6 86 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 F8W036 122 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 AGPAT2O15120 278 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 NBR2O15453 112 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 SNAPINO95295 136 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 SFTA3P0C7M3 94 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 OR13C7P0DN81 318 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 HNF1AP20823 631 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 RPL27AP46776 148 aaKnown RBP4.31□□□□□ -1.72
COL17A1-206ENST00000483876 PSMB3P49720 205 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 BPIFB3P59826 476 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 SELENOTP62341 195 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 CCL20P78556 96 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 LCN2P80188 198 aa4.31□□□□□ -1.72
COL17A1-206ENST00000483876 SRSF3P84103 164 aaKnown RBP4.31□□□□□ -1.72
COL17A1-206ENST00000483876 GAMTQ14353 236 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms