RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 CFHR3Q02985 330 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 SCGB2A2Q13296 93 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 ETV3LQ6ZN32 361 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 SLC35E3Q7Z769 313 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 STX12Q86Y82 276 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 MRPL41Q8IXM3 137 aaKnown RBP6.47□□□□□ -1.37
USP4-210ENST00000483212 TMEM217Q8N7C4 229 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 OR5C1Q8NGR4 320 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 FAM110DQ8TAY7 271 aaPredicted RBP6.47□□□□□ -1.37
USP4-210ENST00000483212 FANCD2OSQ96PS1 177 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 ARPC5LQ9BPX5 153 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 SMIM3Q9BZL3 60 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 WNT10AQ9GZT5 417 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 ARV1Q9H2C2 271 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 FNDC4Q9H6D8 234 aaPredicted RBP6.47□□□□□ -1.37
USP4-210ENST00000483212 F8P00451 2351 aa6.47□□□□□ -1.37
USP4-210ENST00000483212 IGLV11-55A0A075B6I3 123 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 TRAV41A0A0B4J266 112 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 TAAR5O14804 337 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 SCAF4O95104 1147 aaKnown RBP6.46□□□□□ -1.38
USP4-210ENST00000483212 RNASE1P07998 156 aaKnown RBP6.46□□□□□ -1.38
USP4-210ENST00000483212 FAM157CP0CG43 387 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 SNCAP37840 140 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 DLK1P80370 383 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 IFITM2Q01629 132 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 CD69Q07108 199 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 SLC38A11Q08AI6 406 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 CLINT1Q14677 625 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 MLANAQ16655 118 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 AKIRIN2Q53H80 203 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 ARSJQ5FYB0 599 aaPredicted RBP6.46□□□□□ -1.38
USP4-210ENST00000483212 RPL7L1Q6DKI1 246 aaKnown RBP6.46□□□□□ -1.38
USP4-210ENST00000483212 OR8G2PQ6IF36 304 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 UNQ5815/PRO19632Q6UWF5 114 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 RBMS3Q6XE24 437 aaKnown RBP6.46□□□□□ -1.38
USP4-210ENST00000483212 OR10P1Q8NGE3 313 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 OR1S2Q8NGQ3 325 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 STOML3Q8TAV4 291 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 RNASEH2CQ8TDP1 164 aaKnown RBP6.46□□□□□ -1.38
USP4-210ENST00000483212 ABHD5Q8WTS1 349 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 TMEM68Q96MH6 324 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 ATP5SQ99766 215 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 NPFFR1Q9GZQ6 430 aa6.46□□□□□ -1.38
USP4-210ENST00000483212 MRPL36Q9P0J6 103 aaKnown RBP6.46□□□□□ -1.38
USP4-210ENST00000483212 MAST4O15021 2626 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 TRBV9A0A0B4J1U6 114 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 KANTRA0A1W2PQU2 76 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 FNDC10F2Z333 226 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 I3L2K1 104 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 K7EIM0 57 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 AP4M1O00189 453 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 BRI3O95415 125 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 PRH1P02810 166 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 IFNA4P05014 189 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 SUB1P53999 127 aaKnown RBP eCLIP6.45□□□□□ -1.38
USP4-210ENST00000483212 RAB11AP62491 216 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 UBA52P62987 128 aaKnown RBP6.45□□□□□ -1.38
USP4-210ENST00000483212 HBG1P69891 147 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 HBG2P69892 147 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 ATP6V1FQ16864 119 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 ECSCRQ19T08 205 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 TMEM95Q3KNT9 176 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 C9orf152Q5JTZ5 239 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 SLC51BQ86UW2 128 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 UBAC2Q8NBM4 344 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 OR5T1Q8NG75 326 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 ZNF418Q8TF45 676 aaPredicted RBP6.45□□□□□ -1.38
USP4-210ENST00000483212 PINX1Q96BK5 328 aaKnown RBP6.45□□□□□ -1.38
USP4-210ENST00000483212 NOL4LQ96MY1 436 aaPredicted RBP6.45□□□□□ -1.38
USP4-210ENST00000483212 TMEM147Q9BVK8 224 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 GGACTQ9BVM4 153 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 PARD6GQ9BYG4 376 aaPredicted RBP6.45□□□□□ -1.38
USP4-210ENST00000483212 PRSS22Q9GZN4 317 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 ZC4H2Q9NQZ6 224 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 LINC00527Q9UJ94 153 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 PAIP2BQ9ULR5 123 aaKnown RBP6.45□□□□□ -1.38
USP4-210ENST00000483212 WDR83OSQ9Y284 106 aa6.45□□□□□ -1.38
USP4-210ENST00000483212 TRIM77I1YAP6 450 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 CORTO00230 105 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 TSPAN9O75954 239 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 DFFBO76075 338 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 JTBO76095 146 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 MT-CO2P00403 227 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 CFDP00746 253 aaPredicted RBP6.44□□□□□ -1.38
USP4-210ENST00000483212 IGLV1-40P01703 118 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 GPX4P36969 197 aaPredicted RBP6.44□□□□□ -1.38
USP4-210ENST00000483212 RPL15P61313 204 aaKnown RBP6.44□□□□□ -1.38
USP4-210ENST00000483212 GAMTQ14353 236 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 Q6ZSV7 163 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 SLC16A13Q7RTY0 426 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 LILRB2Q8N423 598 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 OR1L6Q8NGR2 347 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 CACNG8Q8WXS5 425 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 ST8SIA2Q92186 375 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 TAF15Q92804 592 aaKnown RBP eCLIP6.44□□□□□ -1.38
USP4-210ENST00000483212 GINS3Q9BRX5 216 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 GON7Q9BXV9 100 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 WDR61Q9GZS3 305 aaKnown RBP6.44□□□□□ -1.38
USP4-210ENST00000483212 SERTAD4Q9NUC0 356 aa6.44□□□□□ -1.38
USP4-210ENST00000483212 UQCC1Q9NVA1 299 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms