RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 ATG5Q9H1Y0 275 aa5.42□□□□□ -1.54
USP54-213ENST00000481991 VSIRQ9H7M9 311 aa5.42□□□□□ -1.54
USP54-213ENST00000481991 Q9H8V8 135 aa5.42□□□□□ -1.54
USP54-213ENST00000481991 PGPEP1Q9NXJ5 209 aa5.42□□□□□ -1.54
USP54-213ENST00000481991 ELF5Q9UKW6 265 aaPredicted RBP5.42□□□□□ -1.54
USP54-213ENST00000481991 NACAE9PAV3 2078 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 FLG2Q5D862 2391 aaPredicted RBP5.41□□□□□ -1.54
USP54-213ENST00000481991 METTL21EPA6NDL7 271 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 HBE1P02100 147 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 CD1AP06126 327 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 DEFB130BP0DP73 79 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 DEFB130AP0DP74 79 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 HIST1H1DP16402 221 aaKnown RBP5.41□□□□□ -1.54
USP54-213ENST00000481991 P2RY1P47900 373 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 PPP5CP53041 499 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 FXYD4P59646 89 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 SNRPD3P62318 126 aaKnown RBP5.41□□□□□ -1.54
USP54-213ENST00000481991 CATR1Q13166 79 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 CDNFQ49AH0 187 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 SERTAD4-AS1Q5TG53 156 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 AADACL3Q5VUY0 350 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 THOC7Q6I9Y2 204 aaKnown RBP5.41□□□□□ -1.54
USP54-213ENST00000481991 SSX7Q7RTT5 188 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 ZNF485Q8NCK3 441 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 OR4B1Q8NGF8 309 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 GRAMD2BQ96HH9 432 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 C17orf77Q96MU5 243 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 UHRF2Q96PU4 802 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 METTL26Q96S19 204 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 SLC5A7Q9GZV3 580 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 DCSTAMPQ9H295 470 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 NDUFA4L2Q9NRX3 87 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 LINC00588Q9Y4M8 146 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 YTHDF2Q9Y5A9 579 aaKnown RBP5.41□□□□□ -1.54
USP54-213ENST00000481991 V9GY05 133 aa5.41□□□□□ -1.54
USP54-213ENST00000481991 SRRM2Q9UQ35 2752 aaKnown RBP5.41□□□□□ -1.54
USP54-213ENST00000481991 LOC102723971A0A1B0GUV8 181 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 ERICH4A6NGS2 130 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 KRASP01116 189 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 FCER2P06734 321 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 FGF9P31371 208 aaPredicted RBP5.4□□□□□ -1.54
USP54-213ENST00000481991 FCGR2CP31995 323 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 RANBP1P43487 201 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 NPBWR1P48145 328 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 ARPC4P59998 168 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 HAMPP81172 84 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 LCE2AQ5TA79 106 aaPredicted RBP5.4□□□□□ -1.54
USP54-213ENST00000481991 CNIH2Q6PI25 160 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 ZNF600Q6ZNG1 722 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 AHSA2Q719I0 299 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 NANOGP1Q8N7R0 232 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 BPIFB6Q8NFQ5 453 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 LINC00052Q96N35 136 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 NEU1Q99519 415 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 GFI1Q99684 422 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 TMEM208Q9BTX3 173 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 GOLT1BQ9Y3E0 138 aa5.4□□□□□ -1.54
USP54-213ENST00000481991 A0A1B0GU03 582 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 H3BMM0 161 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 I3L2K1 104 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 M0QYG6 137 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 MFNGO00587 321 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 ATP8B1O43520 1251 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 UCHL1P09936 223 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 HSMCR30P0CW71 290 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 PTHLHP12272 177 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 CALRP27797 417 aaKnown RBP5.39□□□□□ -1.55
USP54-213ENST00000481991 G6PCP35575 357 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 LPAR6P43657 344 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 RASSF2P50749 326 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 EIF4EBP1Q13541 118 aaPredicted RBP5.39□□□□□ -1.55
USP54-213ENST00000481991 USF2Q15853 346 aaPredicted RBP5.39□□□□□ -1.55
USP54-213ENST00000481991 RRN3P1Q2M238 152 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 TTC32Q5I0X7 151 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 ZNF705AQ6ZN79 300 aaPredicted RBP5.39□□□□□ -1.55
USP54-213ENST00000481991 Q6ZSN1 163 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 OR1P1Q8NH06 330 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 CCDC90BQ9GZT6 254 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 MAGT1Q9H0U3 335 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 ZNF586Q9NXT0 402 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 FKBP11Q9NYL4 201 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 UBR4Q5T4S7 5183 aa5.39□□□□□ -1.55
USP54-213ENST00000481991 ZNF705FA8MVS1 300 aaPredicted RBP5.38□□□□□ -1.55
USP54-213ENST00000481991 PTGES3LE9PB15 166 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 ARL6IP5O75915 188 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 TMEM50AO95807 157 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 ZNF705DP0CH99 300 aaPredicted RBP5.38□□□□□ -1.55
USP54-213ENST00000481991 ZNF705BP0CI00 300 aaPredicted RBP5.38□□□□□ -1.55
USP54-213ENST00000481991 DTYMKP23919 212 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 GNRHRP30968 328 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 AP2S1P53680 142 aaPredicted RBP5.38□□□□□ -1.55
USP54-213ENST00000481991 GNG2P59768 71 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 DEFB1P60022 68 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 ERHP84090 104 aaKnown RBP5.38□□□□□ -1.55
USP54-213ENST00000481991 OR5I1Q13606 314 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 ICAM4Q14773 271 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 OXA1LQ15070 435 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 FCN2Q15485 313 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 SPINK9Q5DT21 86 aa5.38□□□□□ -1.55
USP54-213ENST00000481991 Q6ZS49 121 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms