RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 ATP6V0CP27449 155 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 SUB1P53999 127 aaKnown RBP eCLIP10.22□□□□□ -0.77
COL4A1-202ENST00000467182 CD69Q07108 199 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 ALKAL2Q6UX46 152 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 ZNF767PQ75MW2 155 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 HSD17B11Q8NBQ5 300 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 LFNGQ8NES3 379 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 RNASEH2CQ8TDP1 164 aaKnown RBP10.22□□□□□ -0.77
COL4A1-202ENST00000467182 FANCD2OSQ96PS1 177 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 WDR61Q9GZS3 305 aaKnown RBP10.22□□□□□ -0.77
COL4A1-202ENST00000467182 WNT10AQ9GZT5 417 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 SH3BGRL3Q9H299 93 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 UQCC1Q9NVA1 299 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 MRPL36Q9P0J6 103 aaKnown RBP10.22□□□□□ -0.77
COL4A1-202ENST00000467182 WDR83OSQ9Y284 106 aa10.22□□□□□ -0.77
COL4A1-202ENST00000467182 MXRA5Q9NR99 2828 aa10.21□□□□□ -0.77
COL4A1-202ENST00000467182 IGF1P05019 195 aa10.21□□□□□ -0.77
COL4A1-202ENST00000467182 HNF1AP20823 631 aa10.21□□□□□ -0.77
COL4A1-202ENST00000467182 GPX4P36969 197 aaPredicted RBP10.21□□□□□ -0.77
COL4A1-202ENST00000467182 EIF5AP63241 154 aaKnown RBP10.21□□□□□ -0.77
COL4A1-202ENST00000467182 RUNX1Q01196 453 aa10.21□□□□□ -0.77
COL4A1-202ENST00000467182 TREML4Q6UXN2 200 aa10.21□□□□□ -0.77
COL4A1-202ENST00000467182 TMEM86BQ8N661 226 aa10.21□□□□□ -0.77
COL4A1-202ENST00000467182 FAM110DQ8TAY7 271 aaPredicted RBP10.21□□□□□ -0.77
COL4A1-202ENST00000467182 SCARB1Q8WTV0 552 aa10.21□□□□□ -0.77
COL4A1-202ENST00000467182 TNFRSF19Q9NS68 423 aa10.21□□□□□ -0.77
COL4A1-202ENST00000467182 LSM4Q9Y4Z0 139 aaKnown RBP10.21□□□□□ -0.77
COL4A1-202ENST00000467182 IGLV11-55A0A075B6I3 123 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 BTBD17A6NE02 478 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 G3V318 75 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 I3L2K1 104 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 IFNA7P01567 189 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 IFNA5P01569 189 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 PRH1P02810 166 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 SEC11BP0C7V7 166 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 NOTCH2Q04721 2471 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 GAMTQ14353 236 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 AKIRIN2Q53H80 203 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 FAM74A1Q5RGS3 127 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 UNQ5815/PRO19632Q6UWF5 114 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 SLC16A13Q7RTY0 426 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 CENPVQ7Z7K6 275 aaPredicted RBP10.2□□□□□ -0.78
COL4A1-202ENST00000467182 OR5T1Q8NG75 326 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 TMED6Q8WW62 240 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 TAF15Q92804 592 aaKnown RBP eCLIP10.2□□□□□ -0.78
COL4A1-202ENST00000467182 TMEM68Q96MH6 324 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 GSX1Q9H4S2 264 aaPredicted RBP10.2□□□□□ -0.78
COL4A1-202ENST00000467182 ESM1Q9NQ30 184 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 UBQLN2Q9UHD9 624 aa10.2□□□□□ -0.78
COL4A1-202ENST00000467182 RPS10-NUDT3A0A1W2PQS6 291 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 K7EIM0 57 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 SOX15O60248 233 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 FAM157CP0CG43 387 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 ECSCRQ19T08 205 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 C9orf152Q5JTZ5 239 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 SLC25A24Q6NUK1 477 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 SLC35E3Q7Z769 313 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 OR1L6Q8NGR2 347 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 OR2T6Q8NHC8 308 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 CACNG8Q8WXS5 425 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 RSG1Q9BU20 258 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 SLC25A32Q9H2D1 315 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 NPVFQ9HCQ7 196 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 ZNF580Q9UK33 172 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 TLN2Q9Y4G6 2542 aa10.19□□□□□ -0.78
COL4A1-202ENST00000467182 CUBNO60494 3623 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 IGKV1OR2-108A0A075B7D4 117 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 TRAV41A0A0B4J266 112 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 DNAJC9-AS1A6NH13 148 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 CORTO00230 105 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 MT-CO2P00403 227 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 FGF7P21781 194 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 PPIFP30405 207 aaKnown RBP10.18□□□□□ -0.78
COL4A1-202ENST00000467182 OPRK1P41145 380 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 CFHR3Q02985 330 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 BTNL8Q6UX41 500 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 TMEM144Q7Z5S9 345 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 SCGB1C1Q8TD33 95 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 GNPNAT1Q96EK6 184 aaPredicted RBP10.18□□□□□ -0.78
COL4A1-202ENST00000467182 MISP3Q96FF7 219 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 MGST2Q99735 147 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 PSMG3Q9BT73 122 aaPredicted RBP10.18□□□□□ -0.78
COL4A1-202ENST00000467182 NPCDR1Q9BY65 106 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 ZNF702PQ9H963 129 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 LINC00527Q9UJ94 153 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 TIMM9Q9Y5J7 89 aa10.18□□□□□ -0.78
COL4A1-202ENST00000467182 IGKV1D-37A0A075B6S9 117 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 TRBV9A0A0B4J1U6 114 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 IGHV3-21A0A0B4J1V1 117 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 SMCO3A2RU48 225 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 NDUFB8O95169 186 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 IGHV3-48P01763 117 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 SULT1A2P50226 295 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 Q71RC1 249 aaPredicted RBP10.17□□□□□ -0.78
COL4A1-202ENST00000467182 THAP8Q8NA92 274 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 OR2G3Q8NGZ4 309 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 PCNPQ8WW12 178 aaKnown RBP10.17□□□□□ -0.78
COL4A1-202ENST00000467182 NOL4LQ96MY1 436 aaPredicted RBP10.17□□□□□ -0.78
COL4A1-202ENST00000467182 DUX5Q96PT3 197 aa10.17□□□□□ -0.78
COL4A1-202ENST00000467182 CDC42EP3Q9UKI2 254 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms