RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 PLECQ15149 4684 aaKnown RBP11.34□□□□□ -0.59
SKA3-204ENST00000462482 RBMS2Q15434 407 aaKnown RBP11.34□□□□□ -0.59
SKA3-204ENST00000462482 LGALS9CQ6DKI2 356 aa11.34□□□□□ -0.59
SKA3-204ENST00000462482 TCF24Q7RTU0 167 aa11.34□□□□□ -0.59
SKA3-204ENST00000462482 ZNF114Q8NC26 417 aa11.34□□□□□ -0.59
SKA3-204ENST00000462482 OR11H2Q8NH07 326 aa11.34□□□□□ -0.59
SKA3-204ENST00000462482 C11orf45Q8TAV5 145 aa11.34□□□□□ -0.59
SKA3-204ENST00000462482 TMEM231Q9H6L2 316 aa11.34□□□□□ -0.59
SKA3-204ENST00000462482 SCPEP1Q9HB40 452 aa11.34□□□□□ -0.59
SKA3-204ENST00000462482 FBXL17Q9UF56 701 aa11.34□□□□□ -0.59
SKA3-204ENST00000462482 IGHV3OR16-13A0A075B7E8 117 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 IGHV3-74A0A0B4J1X5 117 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 ATG12O94817 140 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 CA1P00915 261 aaPredicted RBP11.33□□□□□ -0.6
SKA3-204ENST00000462482 RCVRNP35243 200 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 SUB1P53999 127 aaKnown RBP eCLIP11.33□□□□□ -0.6
SKA3-204ENST00000462482 LSM3P62310 102 aaKnown RBP11.33□□□□□ -0.6
SKA3-204ENST00000462482 LYSMD2Q8IV50 215 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 SLC35G3Q8N808 338 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 GPX8Q8TED1 209 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 MRGPRFQ96AM1 343 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 SEC22AQ96IW7 307 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 PDCD10Q9BUL8 212 aa11.33□□□□□ -0.6
SKA3-204ENST00000462482 DFFBO76075 338 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 IGHV3-48P01763 117 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 TGFBR1P36897 503 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 UCP3P55916 312 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 TMEM187Q14656 261 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 ZNF124Q15973 351 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 SNX29P2Q8IUI4 249 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 CENPSQ8N2Z9 138 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 C11orf68Q9H3H3 251 aaKnown RBP11.32□□□□□ -0.6
SKA3-204ENST00000462482 COMMD3Q9UBI1 195 aa11.32□□□□□ -0.6
SKA3-204ENST00000462482 A0A1W2PS18 150 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 CORTO00230 105 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 IFNA17P01571 189 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 APOA1P02647 267 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 PGAM2P15259 253 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 AKR1C2P52895 323 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 NANOS2P60321 138 aaKnown RBP11.31□□□□□ -0.6
SKA3-204ENST00000462482 TOMM20LQ6UXN7 152 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 ZNF600Q6ZNG1 722 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 STHQ8IWL8 128 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 RPP25LQ8N5L8 163 aaKnown RBP11.31□□□□□ -0.6
SKA3-204ENST00000462482 NARS2Q96I59 477 aaKnown RBP11.31□□□□□ -0.6
SKA3-204ENST00000462482 ENY2Q9NPA8 101 aa11.31□□□□□ -0.6
SKA3-204ENST00000462482 PUS1Q9Y606 427 aaKnown RBP eCLIP11.31□□□□□ -0.6
SKA3-204ENST00000462482 A0A087WXM4 84 aa11.3□□□□□ -0.6
SKA3-204ENST00000462482 TRAV2A0A0B4J234 112 aa11.3□□□□□ -0.6
SKA3-204ENST00000462482 DEFB131AP59861 70 aa11.3□□□□□ -0.6
SKA3-204ENST00000462482 FAM90A2PQ658T7 463 aa11.3□□□□□ -0.6
SKA3-204ENST00000462482 ST8SIA2Q92186 375 aa11.3□□□□□ -0.6
SKA3-204ENST00000462482 MS4A6AQ9H2W1 248 aa11.3□□□□□ -0.6
SKA3-204ENST00000462482 RABAC1Q9UI14 185 aa11.3□□□□□ -0.6
SKA3-204ENST00000462482 DEDDO75618 318 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 IGKV1-39P01597 117 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 IGKV1D-39P04432 117 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 NPPCP23582 126 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 HOXA1P49639 335 aaPredicted RBP11.29□□□□□ -0.6
SKA3-204ENST00000462482 TCTAP57738 103 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 SPINK9Q5DT21 86 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 RNASE11Q8TAA1 199 aaKnown RBP11.29□□□□□ -0.6
SKA3-204ENST00000462482 C2CD4CQ8TF44 421 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 YIPF6Q96EC8 236 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 ZNF486Q96H40 463 aaPredicted RBP11.29□□□□□ -0.6
SKA3-204ENST00000462482 VSIRQ9H7M9 311 aa11.29□□□□□ -0.6
SKA3-204ENST00000462482 IGHV3-66A0A0C4DH42 116 aa11.28□□□□□ -0.6
SKA3-204ENST00000462482 TRIM16LQ309B1 348 aa11.28□□□□□ -0.6
SKA3-204ENST00000462482 TMEM41BQ5BJD5 291 aa11.28□□□□□ -0.6
SKA3-204ENST00000462482 RNASE10Q5GAN6 216 aaKnown RBP11.28□□□□□ -0.6
SKA3-204ENST00000462482 LEMD1Q68G75 181 aa11.28□□□□□ -0.6
SKA3-204ENST00000462482 TMEM230Q96A57 120 aa11.28□□□□□ -0.6
SKA3-204ENST00000462482 RRNAD1Q96FB5 475 aaKnown RBP11.28□□□□□ -0.6
SKA3-204ENST00000462482 GRAMD2BQ96HH9 432 aa11.28□□□□□ -0.6
SKA3-204ENST00000462482 METTL26Q96S19 204 aa11.28□□□□□ -0.6
SKA3-204ENST00000462482 FAM25AB3EWG3 89 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 FAM25CB3EWG5 89 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 FAM25GB3EWG6 89 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 M0QYG6 137 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 TMEM50AO95807 157 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 EIF2B2P49770 351 aaKnown RBP11.27□□□□□ -0.61
SKA3-204ENST00000462482 RND3P61587 244 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 MZT2AQ6P582 158 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 CCDC71LQ8N9Z2 235 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 STXBP6Q8NFX7 210 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 ZNF414Q96IQ9 312 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 COPZ2Q9P299 210 aa11.27□□□□□ -0.61
SKA3-204ENST00000462482 C11orf94C9JXX5 98 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 INS-IGF2F8WCM5 200 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 DEFB4AO15263 64 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 TNFAIP8O95379 198 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 APOHP02749 345 aaPredicted RBP11.26□□□□□ -0.61
SKA3-204ENST00000462482 OPRK1P41145 380 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 PIGPP57054 158 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 IZUMO4Q1ZYL8 232 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 ARRDC1Q8N5I2 433 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 ZFAND1Q8TCF1 268 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 ZFAND3Q9H8U3 227 aa11.26□□□□□ -0.61
SKA3-204ENST00000462482 C3orf85A0A1B0GTC6 90 aa11.25□□□□□ -0.61
SKA3-204ENST00000462482 RPS10-NUDT3A0A1W2PQS6 291 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms