RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 DEFB114Q30KQ6 69 aa13.99□□□□□ -0.17
HOXD3-204ENST00000459979 OR52E5Q8NH55 327 aa13.99□□□□□ -0.17
HOXD3-204ENST00000459979 PDCD10Q9BUL8 212 aa13.99□□□□□ -0.17
HOXD3-204ENST00000459979 SRRQ9GZT4 340 aa13.99□□□□□ -0.17
HOXD3-204ENST00000459979 PALMDQ9NP74 551 aa13.99□□□□□ -0.17
HOXD3-204ENST00000459979 ZC4H2Q9NQZ6 224 aa13.99□□□□□ -0.17
HOXD3-204ENST00000459979 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.99□□□□□ -0.17
HOXD3-204ENST00000459979 RYR2Q92736 4967 aa13.99□□□□□ -0.17
HOXD3-204ENST00000459979 DYNC2H1Q8NCM8 4307 aaKnown RBP13.99□□□□□ -0.17
HOXD3-204ENST00000459979 IZUMO1RA6ND01 250 aa13.98□□□□□ -0.17
HOXD3-204ENST00000459979 IFNA17P01571 189 aa13.98□□□□□ -0.17
HOXD3-204ENST00000459979 FRMD6-AS1P0C7T7 363 aa13.98□□□□□ -0.17
HOXD3-204ENST00000459979 C8orf88P0DMB2 117 aa13.98□□□□□ -0.17
HOXD3-204ENST00000459979 TMEM187Q14656 261 aa13.98□□□□□ -0.17
HOXD3-204ENST00000459979 CD300EQ496F6 205 aaPredicted RBP13.98□□□□□ -0.17
HOXD3-204ENST00000459979 MARC2Q969Z3 335 aa13.98□□□□□ -0.17
HOXD3-204ENST00000459979 TXN2Q99757 166 aa13.98□□□□□ -0.17
HOXD3-204ENST00000459979 ZNF320A2RRD8 509 aa13.97□□□□□ -0.17
HOXD3-204ENST00000459979 OR2T8A6NH00 312 aa13.97□□□□□ -0.17
HOXD3-204ENST00000459979 ADMP35318 185 aa13.97□□□□□ -0.17
HOXD3-204ENST00000459979 SUPT4H1P63272 117 aaKnown RBP13.97□□□□□ -0.17
HOXD3-204ENST00000459979 TMEM268Q5VZI3 342 aa13.97□□□□□ -0.17
HOXD3-204ENST00000459979 UNQ9165/PRO28630Q6UXU0 137 aa13.97□□□□□ -0.17
HOXD3-204ENST00000459979 SLC35G3Q8N808 338 aa13.97□□□□□ -0.17
HOXD3-204ENST00000459979 RNASE11Q8TAA1 199 aaKnown RBP13.97□□□□□ -0.17
HOXD3-204ENST00000459979 SLC25A21Q9BQT8 299 aaPredicted RBP13.97□□□□□ -0.17
HOXD3-204ENST00000459979 CACFD1Q9UGQ2 172 aa13.97□□□□□ -0.17
HOXD3-204ENST00000459979 DNAH7Q8WXX0 4024 aa13.97□□□□□ -0.17
HOXD3-204ENST00000459979 ZNF785A8K8V0 405 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 NDUFA4O00483 81 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 CTSGP08311 255 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 EDN2P20800 178 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 SNCAP37840 140 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 SPCS3P61009 180 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 BSXQ3C1V8 233 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 DYNLRB2Q8TF09 96 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 TMEM190Q8WZ59 177 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 GPR146Q96CH1 333 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 CHRDL1Q9BU40 450 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 C19orf73Q9NVV2 129 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 MRPL27Q9P0M9 148 aaKnown RBP13.96□□□□□ -0.17
HOXD3-204ENST00000459979 UFC1Q9Y3C8 167 aa13.96□□□□□ -0.17
HOXD3-204ENST00000459979 IGHV3-21A0A0B4J1V1 117 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 A0A0B4J2A0 478 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 PIGBOS1A0A0B4J2F0 54 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 MT-CO2P00403 227 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 RNASE2P10153 161 aaKnown RBP13.95□□□□□ -0.18
HOXD3-204ENST00000459979 AKR1C4P17516 323 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 SUB1P53999 127 aaKnown RBP eCLIP13.95□□□□□ -0.18
HOXD3-204ENST00000459979 MFAP4P55083 255 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 SRPXP78539 464 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 TM4SF20Q53R12 229 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 TMEM128Q5BJH2 165 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 SPINK9Q5DT21 86 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 UXS1Q8NBZ7 420 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 MISP3Q96FF7 219 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 CACNG5Q9UF02 275 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 SHPKQ9UHJ6 478 aa13.95□□□□□ -0.18
HOXD3-204ENST00000459979 CORTO00230 105 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 IGHV4-30-4P0DP06 118 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 ANXA3P12429 323 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 LYL1P12980 280 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 Q56UQ5 140 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 ZFAND6Q6FIF0 208 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 GTSCR1Q86UQ5 136 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 CACNG8Q8WXS5 425 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 ZNF414Q96IQ9 312 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 MLXQ9UH92 298 aa13.94□□□□□ -0.18
HOXD3-204ENST00000459979 IGHV3-35A0A0C4DH35 117 aa13.93□□□□□ -0.18
HOXD3-204ENST00000459979 K7EMT4 169 aa13.93□□□□□ -0.18
HOXD3-204ENST00000459979 HOXA1P49639 335 aaPredicted RBP13.93□□□□□ -0.18
HOXD3-204ENST00000459979 BAK1Q16611 211 aa13.93□□□□□ -0.18
HOXD3-204ENST00000459979 NMSQ5H8A3 153 aa13.93□□□□□ -0.18
HOXD3-204ENST00000459979 ZNF57Q68EA5 555 aaPredicted RBP13.93□□□□□ -0.18
HOXD3-204ENST00000459979 UBAC2Q8NBM4 344 aa13.93□□□□□ -0.18
HOXD3-204ENST00000459979 ENY2Q9NPA8 101 aa13.93□□□□□ -0.18
HOXD3-204ENST00000459979 DAZ1Q9NQZ3 744 aaKnown RBP13.93□□□□□ -0.18
HOXD3-204ENST00000459979 TRAV25A0A0B4J276 109 aa13.92□□□□□ -0.18
HOXD3-204ENST00000459979 NAP1L6A6NFF2 107 aa13.92□□□□□ -0.18
HOXD3-204ENST00000459979 NUPL2O15504 423 aaKnown RBP13.92□□□□□ -0.18
HOXD3-204ENST00000459979 SULT1A3P0DMM9 295 aa13.92□□□□□ -0.18
HOXD3-204ENST00000459979 SULT1A4P0DMN0 295 aa13.92□□□□□ -0.18
HOXD3-204ENST00000459979 RELQ04864 619 aaPredicted RBP13.92□□□□□ -0.18
HOXD3-204ENST00000459979 LGI3Q8N145 548 aa13.92□□□□□ -0.18
HOXD3-204ENST00000459979 LRTM2Q8N967 370 aa13.92□□□□□ -0.18
HOXD3-204ENST00000459979 SDHCQ99643 169 aaPredicted RBP13.92□□□□□ -0.18
HOXD3-204ENST00000459979 ZMAT4Q9H898 229 aa13.92□□□□□ -0.18
HOXD3-204ENST00000459979 SACSQ9NZJ4 4579 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 DUXBA0A1W2PPF3 345 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 C15orf62A8K5M9 175 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 HTR2BP41595 481 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 NPBWR1P48145 328 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 CCR6P51684 374 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 LYZL2Q7Z4W2 148 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 TMEM61Q8N0U2 210 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 DUSP18Q8NEJ0 188 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 PINX1Q96BK5 328 aaKnown RBP13.91□□□□□ -0.18
HOXD3-204ENST00000459979 PRR13Q9NZ81 148 aa13.91□□□□□ -0.18
HOXD3-204ENST00000459979 LCE6AA0A183 80 aa13.9□□□□□ -0.18
HOXD3-204ENST00000459979 RBMS2Q15434 407 aaKnown RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms