RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 RBMS2Q15434 407 aaKnown RBP13.15□□□□□ -0.3
USP39-208ENST00000455732 SPINK9Q5DT21 86 aa13.15□□□□□ -0.3
USP39-208ENST00000455732 PLET1Q6UQ28 207 aa13.15□□□□□ -0.3
USP39-208ENST00000455732 TMED4Q7Z7H5 227 aa13.15□□□□□ -0.3
USP39-208ENST00000455732 ZNF436Q9C0F3 470 aaPredicted RBP13.15□□□□□ -0.3
USP39-208ENST00000455732 GAR1Q9NY12 217 aaKnown RBP13.15□□□□□ -0.3
USP39-208ENST00000455732 CACNG5Q9UF02 275 aa13.15□□□□□ -0.3
USP39-208ENST00000455732 SHPKQ9UHJ6 478 aa13.15□□□□□ -0.3
USP39-208ENST00000455732 SMAD5-AS1Q9Y6J3 95 aa13.15□□□□□ -0.3
USP39-208ENST00000455732 STAB2Q8WWQ8 2551 aa13.15□□□□□ -0.3
USP39-208ENST00000455732 TENM3Q9P273 2699 aa13.15□□□□□ -0.31
USP39-208ENST00000455732 TMEM213A2RRL7 107 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 OR2T8A6NH00 312 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 SNCAP37840 140 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 INPP1P49441 399 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 BSXQ3C1V8 233 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 NMSQ5H8A3 153 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 LCN12Q6JVE5 192 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 LINC00299Q6ZSB3 139 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 LGI3Q8N145 548 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 MISP3Q96FF7 219 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 TXN2Q99757 166 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 C7orf50Q9BRJ6 194 aaKnown RBP13.14□□□□□ -0.31
USP39-208ENST00000455732 ENY2Q9NPA8 101 aa13.14□□□□□ -0.31
USP39-208ENST00000455732 IGHV3-21A0A0B4J1V1 117 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 DUXBA0A1W2PPF3 345 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 MT-CO2P00403 227 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 NHLRC4P0CG21 123 aaPredicted RBP13.13□□□□□ -0.31
USP39-208ENST00000455732 SULT1A3P0DMM9 295 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 SULT1A4P0DMN0 295 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 RNASE2P10153 161 aaKnown RBP13.13□□□□□ -0.31
USP39-208ENST00000455732 FOLR2P14207 255 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 SUB1P53999 127 aaKnown RBP eCLIP13.13□□□□□ -0.31
USP39-208ENST00000455732 ELLP55199 621 aaPredicted RBP13.13□□□□□ -0.31
USP39-208ENST00000455732 UNQ9165/PRO28630Q6UXU0 137 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 LRTM2Q8N967 370 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 PALMDQ9NP74 551 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 ZC4H2Q9NQZ6 224 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 TECRQ9NZ01 308 aaKnown RBP13.13□□□□□ -0.31
USP39-208ENST00000455732 PRR13Q9NZ81 148 aa13.13□□□□□ -0.31
USP39-208ENST00000455732 CORTO00230 105 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 NDUFB6O95139 128 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 IL7P13232 177 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 ADMP35318 185 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 CCR6P51684 374 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 UBE2MP61081 183 aaKnown RBP13.12□□□□□ -0.31
USP39-208ENST00000455732 Q56UQ5 140 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 LYZL2Q7Z4W2 148 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 CENPSQ8N2Z9 138 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 TMEM190Q8WZ59 177 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 MARC2Q969Z3 335 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 CHRDL1Q9BU40 450 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 UFC1Q9Y3C8 167 aa13.12□□□□□ -0.31
USP39-208ENST00000455732 ZNF320A2RRD8 509 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 A6NHS1 94 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 NDUFA4O00483 81 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 C8orf88P0DMB2 117 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 CBLN1P23435 193 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 MFAP4P55083 255 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 DEFB114Q30KQ6 69 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 CD300EQ496F6 205 aaPredicted RBP13.11□□□□□ -0.31
USP39-208ENST00000455732 UBAC2Q8NBM4 344 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 DYNLRB2Q8TF09 96 aa13.11□□□□□ -0.31
USP39-208ENST00000455732 CENPXA8MT69 81 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 SFT2D2O95562 160 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 CTSGP08311 255 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 EDN2P20800 178 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 VAMP1P23763 118 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 BTCP35070 178 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 HTR2BP41595 481 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 PPP1R1AQ13522 171 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 SMCO1Q147U7 214 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 Q8N1Y9 231 aa13.1□□□□□ -0.31
USP39-208ENST00000455732 PINX1Q96BK5 328 aaKnown RBP13.1□□□□□ -0.31
USP39-208ENST00000455732 IGHV3-35A0A0C4DH35 117 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 A0A1B0GU03 582 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 IZUMO1RA6ND01 250 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 NUPL2O15504 423 aaKnown RBP13.09□□□□□ -0.31
USP39-208ENST00000455732 RELQ04864 619 aaPredicted RBP13.09□□□□□ -0.31
USP39-208ENST00000455732 TNFRSF9Q07011 255 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 CNPY1Q3B7I2 92 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 ANKRD55Q3KP44 614 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 TM4SF20Q53R12 229 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 CACNG8Q8WXS5 425 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 ZNF414Q96IQ9 312 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 ASCL2Q99929 193 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 DAZ1Q9NQZ3 744 aaKnown RBP13.09□□□□□ -0.31
USP39-208ENST00000455732 MRPL27Q9P0M9 148 aaKnown RBP13.09□□□□□ -0.31
USP39-208ENST00000455732 HSPB7Q9UBY9 170 aa13.09□□□□□ -0.31
USP39-208ENST00000455732 HUWE1Q7Z6Z7 4374 aaKnown RBP13.09□□□□□ -0.31
USP39-208ENST00000455732 CEBPZOSA8MTT3 80 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 A8MZ25 164 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 SLC25A6P12236 298 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 NPBWR1P48145 328 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 C2orf83Q53S99 150 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 UXS1Q8NBZ7 420 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 DUSP18Q8NEJ0 188 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 SLC24A4Q8NFF2 622 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 WWC2-AS2Q96NR7 200 aa13.08□□□□□ -0.32
USP39-208ENST00000455732 CCDC32Q9BV29 185 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 217 ms