RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 ENY2Q9NPA8 101 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 ALG5Q9Y673 324 aa6.85□□□□□ -1.31
SYNE1-214ENST00000454018 MPTX1A8MV57 137 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 CCSO14618 274 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 CYB5BO43169 146 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 SSNA1O43805 119 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 SOX15O60248 233 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 MED6O75586 246 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 CLEC3BP05452 202 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 CRYGCP07315 174 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 OR13C7P0DN81 318 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 AREGP15514 252 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 CTRB1P17538 263 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 PSMB6P28072 239 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 WT1-ASQ06250 92 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 IAH1Q2TAA2 248 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-214ENST00000454018 CTRB2Q6GPI1 263 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 C10orf99Q6UWK7 81 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 C3orf56Q8N813 242 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 ZNF114Q8NC26 417 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 OR10W1Q8NGF6 305 aa6.84□□□□□ -1.31
SYNE1-214ENST00000454018 C5orf51A6NDU8 294 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 CEBPZOSA8MTT3 80 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 FAM25EA8MYX2 175 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 GOSR2O14653 212 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 REG1AP05451 166 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 DEFA4P12838 97 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 NKX2-1P43699 371 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-214ENST00000454018 ERHP84090 104 aaKnown RBP6.83□□□□□ -1.32
SYNE1-214ENST00000454018 SPINK9Q5DT21 86 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 TMEM65Q6PI78 240 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 GSG1LQ6UXU4 331 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 ZBTB8BQ8NAP8 495 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-214ENST00000454018 OR5T1Q8NG75 326 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 OR4D5Q8NGN0 318 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 OR1L6Q8NGR2 347 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 MYOZ3Q8TDC0 251 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 OR10C1Q96KK4 312 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 CITED1Q99966 193 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 ZNF747Q9BV97 191 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 ZNF355PQ9NSJ1 428 aa6.83□□□□□ -1.32
SYNE1-214ENST00000454018 F11RQ9Y624 299 aaKnown RBP6.83□□□□□ -1.32
SYNE1-214ENST00000454018 C13orf42A0A1B0GVH6 325 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 FAM223BA6NKX1 122 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 WRBO00258 174 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 NXPH3O95157 252 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 TRGV3P03979 118 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 CD28P10747 220 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 HIST1H1BP16401 226 aaKnown RBP6.82□□□□□ -1.32
SYNE1-214ENST00000454018 TPPP2P59282 170 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 KLK9Q2XQG4 91 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 TCTEX1D4Q5JR98 221 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 FAM223AQ8IWN6 122 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 NECAP1Q8NC96 275 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 OR1P1Q8NH06 330 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 DTD1Q8TEA8 209 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 C2orf50Q96LR7 162 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 CIB3Q96Q77 187 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-214ENST00000454018 HIPK2Q9H2X6 1198 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 ZFP57Q9NU63 452 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 THYN1Q9P016 225 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 KLK9Q9UKQ9 250 aa6.82□□□□□ -1.32
SYNE1-214ENST00000454018 TSSC4Q9Y5U2 329 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-214ENST00000454018 IGLV11-55A0A075B6I3 123 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 TRBV9A0A0B4J1U6 114 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 A0A0G2JLM5 398 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 TCRBV4S1A1TA0A5B7 111 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 CORTO00230 105 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 SYNGR2O43760 224 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 ARL3P36405 182 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 SNCAP37840 140 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 HTR2BP41595 481 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RAB9AP51151 201 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 SUB1P53999 127 aaKnown RBP eCLIP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 KRTAP10-3P60369 221 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RPL23AP62750 156 aaKnown RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 BSXQ3C1V8 233 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 NDUFA11Q86Y39 141 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 C11orf44Q8N8P7 122 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 SLC24A4Q8NFF2 622 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 USMG5Q96IX5 58 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 UBE2E2Q96LR5 201 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 CITED2Q99967 270 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 NMES1Q9C002 83 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 MED28Q9H204 178 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RBKSQ9H477 322 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 GSKIPQ9P0R6 139 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 MGAT4CQ9UBM8 478 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RNASE2P10153 161 aaKnown RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 CDX1P47902 265 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 ATP5IP56385 69 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 FAM3BP58499 235 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RRAS2P62070 204 aaPredicted RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RHOGP84095 191 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 CYCSP99999 105 aaKnown RBP6.81□□□□□ -1.32
SYNE1-214ENST00000454018 RNF151Q2KHN1 245 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 C2orf68Q2NKX9 166 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 C19orf35Q6ZS72 473 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 LCNL1Q6ZST4 164 aa6.81□□□□□ -1.32
SYNE1-214ENST00000454018 NOXA1Q86UR1 476 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms