RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CA1P00915 261 aaPredicted RBP9.76□□□□□ -0.85
HMGB3-204ENST00000448905 NAT1P18440 290 aa9.76□□□□□ -0.85
HMGB3-204ENST00000448905 SUB1P53999 127 aaKnown RBP eCLIP9.76□□□□□ -0.85
HMGB3-204ENST00000448905 HSPE1P61604 102 aaKnown RBP9.76□□□□□ -0.85
HMGB3-204ENST00000448905 UBE2NLQ5JXB2 153 aa9.76□□□□□ -0.85
HMGB3-204ENST00000448905 FAM90A2PQ658T7 463 aa9.76□□□□□ -0.85
HMGB3-204ENST00000448905 FRAS1Q86XX4 4008 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 IGHV3OR16-13A0A075B7E8 117 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 IGHV3-74A0A0B4J1X5 117 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 TRAV2A0A0B4J234 112 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 A0A1W2PS18 150 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 ATG12O94817 140 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 NPPCP23582 126 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 HLA-DMAP28067 261 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 TAS2R20P59543 309 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 ZNF124Q15973 351 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 PHLDA2Q53GA4 152 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 TMEM41BQ5BJD5 291 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 STHQ8IWL8 128 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 SAMD12Q8N8I0 201 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 ZNF114Q8NC26 417 aa9.75□□□□□ -0.85
HMGB3-204ENST00000448905 IGLL5B9A064 214 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 HRH1P35367 487 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 DEFB131AP59861 70 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 PRCDQ00LT1 54 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 NEDD8Q15843 81 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 TOMM20LQ6UXN7 152 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 ZNF600Q6ZNG1 722 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 TBC1D26Q86UD7 250 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 LYSMD2Q8IV50 215 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 NARS2Q96I59 477 aaKnown RBP9.74□□□□□ -0.85
HMGB3-204ENST00000448905 SEC22AQ96IW7 307 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 MS4A6AQ9H2W1 248 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 ANAPC10Q9UM13 185 aa9.74□□□□□ -0.85
HMGB3-204ENST00000448905 HERC2O95714 4834 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 DBX1A6NMT0 343 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 CORTO00230 105 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 IGHV3-48P01763 117 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 UCP3P55916 312 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 PDCD10Q9BUL8 212 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 HRH4Q9H3N8 390 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 VSIRQ9H7M9 311 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 RABAC1Q9UI14 185 aa9.73□□□□□ -0.85
HMGB3-204ENST00000448905 DEFB4AO15263 64 aa9.72□□□□□ -0.85
HMGB3-204ENST00000448905 TMEM50AO95807 157 aa9.72□□□□□ -0.85
HMGB3-204ENST00000448905 IFNA17P01571 189 aa9.72□□□□□ -0.85
HMGB3-204ENST00000448905 RPS19P39019 145 aaKnown RBP9.72□□□□□ -0.85
HMGB3-204ENST00000448905 EIF2B2P49770 351 aaKnown RBP9.72□□□□□ -0.85
HMGB3-204ENST00000448905 LEMD1Q68G75 181 aa9.72□□□□□ -0.85
HMGB3-204ENST00000448905 MORN3Q6PF18 240 aaPredicted RBP9.72□□□□□ -0.85
HMGB3-204ENST00000448905 ST8SIA2Q92186 375 aa9.72□□□□□ -0.85
HMGB3-204ENST00000448905 TMEM230Q96A57 120 aa9.72□□□□□ -0.85
HMGB3-204ENST00000448905 SCPEP1Q9HB40 452 aa9.72□□□□□ -0.85
HMGB3-204ENST00000448905 ENY2Q9NPA8 101 aa9.72□□□□□ -0.85
HMGB3-204ENST00000448905 PUS1Q9Y606 427 aaKnown RBP eCLIP9.72□□□□□ -0.85
HMGB3-204ENST00000448905 SPP1P10451 314 aa9.71□□□□□ -0.86
HMGB3-204ENST00000448905 SLC35G3Q8N808 338 aa9.71□□□□□ -0.86
HMGB3-204ENST00000448905 MRGPRFQ96AM1 343 aa9.71□□□□□ -0.86
HMGB3-204ENST00000448905 GRAMD2BQ96HH9 432 aa9.71□□□□□ -0.86
HMGB3-204ENST00000448905 ZNF414Q96IQ9 312 aa9.71□□□□□ -0.86
HMGB3-204ENST00000448905 METTL26Q96S19 204 aa9.71□□□□□ -0.86
HMGB3-204ENST00000448905 FXYD6Q9H0Q3 95 aa9.71□□□□□ -0.86
HMGB3-204ENST00000448905 VCX3AQ9NNX9 186 aa9.71□□□□□ -0.86
HMGB3-204ENST00000448905 IGHV3-66A0A0C4DH42 116 aa9.7□□□□□ -0.86
HMGB3-204ENST00000448905 ATP6V1G2O95670 118 aa9.7□□□□□ -0.86
HMGB3-204ENST00000448905 APOHP02749 345 aaPredicted RBP9.7□□□□□ -0.86
HMGB3-204ENST00000448905 MIFP14174 115 aa9.7□□□□□ -0.86
HMGB3-204ENST00000448905 PGAM2P15259 253 aa9.7□□□□□ -0.86
HMGB3-204ENST00000448905 RCVRNP35243 200 aa9.7□□□□□ -0.86
HMGB3-204ENST00000448905 AP2S1P53680 142 aaPredicted RBP9.7□□□□□ -0.86
HMGB3-204ENST00000448905 LILRB2Q8N423 598 aa9.7□□□□□ -0.86
HMGB3-204ENST00000448905 GPX8Q8TED1 209 aa9.7□□□□□ -0.86
HMGB3-204ENST00000448905 ZNF486Q96H40 463 aaPredicted RBP9.7□□□□□ -0.86
HMGB3-204ENST00000448905 TRAV30A0A087WSZ9 112 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 INS-IGF2F8WCM5 200 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 IGKV1-39P01597 117 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 APOA1P02647 267 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 IGKV1D-39P04432 117 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 AKR1C2P52895 323 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 NUTF2P61970 127 aaKnown RBP9.69□□□□□ -0.86
HMGB3-204ENST00000448905 KCTD21Q4G0X4 260 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 STXBP6Q8NFX7 210 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 RRNAD1Q96FB5 475 aaKnown RBP9.69□□□□□ -0.86
HMGB3-204ENST00000448905 COMMD3Q9UBI1 195 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 APLNQ9ULZ1 77 aa9.69□□□□□ -0.86
HMGB3-204ENST00000448905 KMT2AQ03164 3969 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 TRAV10A0A0B4J240 114 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 CLN5O75503 358 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 OPRK1P41145 380 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 RPL5P46777 297 aaKnown RBP9.68□□□□□ -0.86
HMGB3-204ENST00000448905 LSM3P62310 102 aaKnown RBP9.68□□□□□ -0.86
HMGB3-204ENST00000448905 PRR20EP86478 221 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 PRR20CP86479 221 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 PRR20DP86480 221 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 PRR20BP86481 221 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 PRR20AP86496 221 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 SNX29P2Q8IUI4 249 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 Q8WTZ3 238 aa9.68□□□□□ -0.86
HMGB3-204ENST00000448905 DNAH10Q8IVF4 4471 aa9.67□□□□□ -0.86
HMGB3-204ENST00000448905 A0A0B4J293 547 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms