RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 OPRK1P41145 380 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 DLK1P80370 383 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 AKR1C1Q04828 323 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 EXOSC2Q13868 293 aaKnown RBP13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 ETFRF1Q6IPR1 90 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 EIF5AL1Q6IS14 154 aaKnown RBP13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 STOML3Q8TAV4 291 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 SLC35E1Q96K37 410 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 WNT10AQ9GZT5 417 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 WFDC1Q9HC57 220 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 CYTL1Q9NRR1 136 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 PMS2P5A8MQ11 134 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 CTRB1P17538 263 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 CTRB2Q6GPI1 263 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 BAP18Q8IXM2 172 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 UBAC2Q8NBM4 344 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 TMEM170AQ8WVE7 144 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 DUX5Q96PT3 197 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 PRSS22Q9GZN4 317 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 FBXO7Q9Y3I1 522 aa13.52□□□□□ -0.25
CCDC28B-202ENST00000421922 ZNF469Q96JG9 3925 aaPredicted RBP13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 TRAV41A0A0B4J266 112 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 TRIM77I1YAP6 450 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 AP4M1O00189 453 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 FBXO24O75426 580 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 IGHG2P01859 326 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 Q71RC1 249 aaPredicted RBP13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 SLC16A13Q7RTY0 426 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 TTC9CQ8N5M4 171 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 HSD17B11Q8NBQ5 300 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 FAM110DQ8TAY7 271 aaPredicted RBP13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 ZNF355PQ9NSJ1 428 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 THYN1Q9P016 225 aa13.51□□□□□ -0.25
CCDC28B-202ENST00000421922 DNAJC9-AS1A6NH13 148 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 CRYGCP07315 174 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 GPX4P36969 197 aaPredicted RBP13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 BLCAPP62952 87 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 CD69Q07108 199 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 AKIRIN2Q53H80 203 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 TEX261Q6UWH6 196 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 OR5T1Q8NG75 326 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 JMJD8Q96S16 334 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 FBN3Q75N90 2809 aa13.5□□□□□ -0.25
CCDC28B-202ENST00000421922 FNDC10F2Z333 226 aa13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 EGR2P11161 476 aaPredicted RBP13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 HIST1H1BP16401 226 aaKnown RBP13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 FGF7P21781 194 aa13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 ASPHD1Q5U4P2 390 aa13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 ZNF709Q8N972 641 aa13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 CACNG8Q8WXS5 425 aa13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 GNPNAT1Q96EK6 184 aaPredicted RBP13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 PHYHIPLQ96FC7 376 aa13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 UBQLN2Q9UHD9 624 aa13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 SVEP1Q4LDE5 3571 aa13.49□□□□□ -0.25
CCDC28B-202ENST00000421922 INAFM1C9JVW0 142 aa13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 PRSS46E5RG02 174 aa13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 CRIP2P52943 208 aaPredicted RBP13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 RAB31Q13636 194 aa13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 C19orf35Q6ZS72 473 aa13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 ZNF767PQ75MW2 155 aa13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 PARD6GQ9BYG4 376 aaPredicted RBP13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 WDR61Q9GZS3 305 aaKnown RBP13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 GSX1Q9H4S2 264 aaPredicted RBP13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 NPVFQ9HCQ7 196 aa13.48□□□□□ -0.25
CCDC28B-202ENST00000421922 LINC01548A6NM66 108 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 C17orf112F2Z3M2 114 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 G3V318 75 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 MPDU1O75352 247 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 IGF1P05019 195 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 CRYBA1P05813 215 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 VWC2Q2TAL6 325 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 ALKAL2Q6UX46 152 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 ZNF680Q8NEM1 530 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 TAF15Q92804 592 aaKnown RBP eCLIP13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 ACY3Q96HD9 319 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 GINS3Q9BRX5 216 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 LINC00527Q9UJ94 153 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 MT-CO2P00403 227 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 PRH1P02810 166 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 ATP6V0CP27449 155 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 MFAP2P55001 183 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 TEPPQ6URK8 271 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 BTNL8Q6UX41 500 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 SCARB1Q8WTV0 552 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 TMED6Q8WW62 240 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 SLC25A32Q9H2D1 315 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 KCNIP2Q9NS61 270 aa13.47□□□□□ -0.25
CCDC28B-202ENST00000421922 CFDP00746 253 aaPredicted RBP13.46□□□□□ -0.26
CCDC28B-202ENST00000421922 RUNX1Q01196 453 aa13.46□□□□□ -0.26
CCDC28B-202ENST00000421922 IFITM2Q01629 132 aa13.46□□□□□ -0.26
CCDC28B-202ENST00000421922 PVRIGQ6DKI7 326 aa13.46□□□□□ -0.26
CCDC28B-202ENST00000421922 ACSM6Q6P461 480 aa13.46□□□□□ -0.26
CCDC28B-202ENST00000421922 ARV1Q9H2C2 271 aa13.46□□□□□ -0.26
CCDC28B-202ENST00000421922 WDR83OSQ9Y284 106 aa13.46□□□□□ -0.26
CCDC28B-202ENST00000421922 MXRA5Q9NR99 2828 aa13.46□□□□□ -0.26
CCDC28B-202ENST00000421922 IGLV11-55A0A075B6I3 123 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 IGHV3-21A0A0B4J1V1 117 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 CLDN34H7C241 214 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 SCGB2A1O75556 95 aa13.45□□□□□ -0.26
CCDC28B-202ENST00000421922 SEC11BP0C7V7 166 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms