RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 TMEM187Q14656 261 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 KLK9Q2XQG4 91 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 PEMTQ9UBM1 199 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 KLK9Q9UKQ9 250 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 TMEM56-RWDD3S4R434 201 aa21.52■■□□□ 1.04
HMGB1-205ENST00000399494 ST8SIA3O43173 380 aa21.51■■□□□ 1.03
HMGB1-205ENST00000399494 SRPXP78539 464 aa21.51■■□□□ 1.03
HMGB1-205ENST00000399494 TMEM128Q5BJH2 165 aa21.51■■□□□ 1.03
HMGB1-205ENST00000399494 SPINK9Q5DT21 86 aa21.51■■□□□ 1.03
HMGB1-205ENST00000399494 LINC00299Q6ZSB3 139 aa21.51■■□□□ 1.03
HMGB1-205ENST00000399494 OR1L6Q8NGR2 347 aa21.51■■□□□ 1.03
HMGB1-205ENST00000399494 IL22RA2Q969J5 263 aa21.51■■□□□ 1.03
HMGB1-205ENST00000399494 C7orf50Q9BRJ6 194 aaKnown RBP21.51■■□□□ 1.03
HMGB1-205ENST00000399494 PRR13Q9NZ81 148 aa21.51■■□□□ 1.03
HMGB1-205ENST00000399494 ZNF785A8K8V0 405 aa21.5■■□□□ 1.03
HMGB1-205ENST00000399494 BMPR1BO00238 502 aa21.5■■□□□ 1.03
HMGB1-205ENST00000399494 VAMP1P23763 118 aa21.5■■□□□ 1.03
HMGB1-205ENST00000399494 SUPT4H1P63272 117 aaKnown RBP21.5■■□□□ 1.03
HMGB1-205ENST00000399494 ERHP84090 104 aaKnown RBP21.5■■□□□ 1.03
HMGB1-205ENST00000399494 CENPSQ8N2Z9 138 aa21.5■■□□□ 1.03
HMGB1-205ENST00000399494 S100ZQ8WXG8 99 aa21.5■■□□□ 1.03
HMGB1-205ENST00000399494 PTTG2Q9NZH5 202 aa21.5■■□□□ 1.03
HMGB1-205ENST00000399494 TRBV7-1A0A0A6YYK4 115 aa21.49■■□□□ 1.03
HMGB1-205ENST00000399494 MFSD2BA6NFX1 497 aa21.49■■□□□ 1.03
HMGB1-205ENST00000399494 CLEC19AQ6UXS0 136 aa21.49■■□□□ 1.03
HMGB1-205ENST00000399494 LGI3Q8N145 548 aa21.49■■□□□ 1.03
HMGB1-205ENST00000399494 IL17DQ8TAD2 202 aa21.49■■□□□ 1.03
HMGB1-205ENST00000399494 ENY2Q9NPA8 101 aa21.49■■□□□ 1.03
HMGB1-205ENST00000399494 CTNNBIP1Q9NSA3 81 aaPredicted RBP21.49■■□□□ 1.03
HMGB1-205ENST00000399494 DMRT1Q9Y5R6 373 aa21.49■■□□□ 1.03
HMGB1-205ENST00000399494 PPP5D1E7EU14 171 aa21.48■■□□□ 1.03
HMGB1-205ENST00000399494 ARL3P36405 182 aa21.48■■□□□ 1.03
HMGB1-205ENST00000399494 HOXA1P49639 335 aaPredicted RBP21.48■■□□□ 1.03
HMGB1-205ENST00000399494 CD81P60033 236 aa21.48■■□□□ 1.03
HMGB1-205ENST00000399494 CD300EQ496F6 205 aaPredicted RBP21.48■■□□□ 1.03
HMGB1-205ENST00000399494 OR2C3Q8N628 320 aa21.48■■□□□ 1.03
HMGB1-205ENST00000399494 CCDC140Q96MF4 163 aa21.48■■□□□ 1.03
HMGB1-205ENST00000399494 NEURL2Q9BR09 285 aa21.48■■□□□ 1.03
HMGB1-205ENST00000399494 CACNG5Q9UF02 275 aa21.48■■□□□ 1.03
HMGB1-205ENST00000399494 PIGBOS1A0A0B4J2F0 54 aa21.47■■□□□ 1.03
HMGB1-205ENST00000399494 OR1P1Q8NH06 330 aa21.47■■□□□ 1.03
HMGB1-205ENST00000399494 GPR146Q96CH1 333 aa21.47■■□□□ 1.03
HMGB1-205ENST00000399494 FAM110AQ9BQ89 295 aa21.47■■□□□ 1.03
HMGB1-205ENST00000399494 CCDC32Q9BV29 185 aa21.47■■□□□ 1.03
HMGB1-205ENST00000399494 GGCTO75223 188 aaKnown RBP21.46■■□□□ 1.03
HMGB1-205ENST00000399494 JTBO76095 146 aa21.46■■□□□ 1.03
HMGB1-205ENST00000399494 NDUFB6O95139 128 aa21.46■■□□□ 1.03
HMGB1-205ENST00000399494 CD7P09564 240 aa21.46■■□□□ 1.03
HMGB1-205ENST00000399494 SNCAP37840 140 aa21.46■■□□□ 1.03
HMGB1-205ENST00000399494 MFAP2P55001 183 aa21.46■■□□□ 1.03
HMGB1-205ENST00000399494 Q6ZRM9 215 aa21.46■■□□□ 1.03
HMGB1-205ENST00000399494 VN1R17PQ8TDU5 208 aa21.46■■□□□ 1.03
HMGB1-205ENST00000399494 A0A0B4J2A0 478 aa21.45■■□□□ 1.02
HMGB1-205ENST00000399494 RBMY1BA6NDE4 496 aaKnown RBP21.45■■□□□ 1.02
HMGB1-205ENST00000399494 RBMY1EA6NEQ0 496 aaKnown RBP21.45■■□□□ 1.02
HMGB1-205ENST00000399494 RBMY1DP0C7P1 496 aaKnown RBP21.45■■□□□ 1.02
HMGB1-205ENST00000399494 DEFB114Q30KQ6 69 aa21.45■■□□□ 1.02
HMGB1-205ENST00000399494 DEFB125Q8N687 156 aa21.45■■□□□ 1.02
HMGB1-205ENST00000399494 MISP3Q96FF7 219 aa21.45■■□□□ 1.02
HMGB1-205ENST00000399494 SHPKQ9UHJ6 478 aa21.45■■□□□ 1.02
HMGB1-205ENST00000399494 SULT1A3P0DMM9 295 aa21.44■■□□□ 1.02
HMGB1-205ENST00000399494 SULT1A4P0DMN0 295 aa21.44■■□□□ 1.02
HMGB1-205ENST00000399494 PPP1R1AQ13522 171 aa21.44■■□□□ 1.02
HMGB1-205ENST00000399494 LYZL2Q7Z4W2 148 aa21.44■■□□□ 1.02
HMGB1-205ENST00000399494 ZNF114Q8NC26 417 aa21.44■■□□□ 1.02
HMGB1-205ENST00000399494 ZNF502Q8TBZ5 544 aa21.44■■□□□ 1.02
HMGB1-205ENST00000399494 PLECQ15149 4684 aaKnown RBP21.43■■□□□ 1.02
HMGB1-205ENST00000399494 IGHV3-21A0A0B4J1V1 117 aa21.43■■□□□ 1.02
HMGB1-205ENST00000399494 HLA-AP01891 365 aaKnown RBP21.43■■□□□ 1.02
HMGB1-205ENST00000399494 GPR183P32249 361 aa21.43■■□□□ 1.02
HMGB1-205ENST00000399494 SPCS3P61009 180 aa21.43■■□□□ 1.02
HMGB1-205ENST00000399494 LYRM1O43325 122 aa21.42■■□□□ 1.02
HMGB1-205ENST00000399494 OR2C1O95371 312 aa21.42■■□□□ 1.02
HMGB1-205ENST00000399494 SFT2D2O95562 160 aa21.42■■□□□ 1.02
HMGB1-205ENST00000399494 CLEC3BP05452 202 aa21.42■■□□□ 1.02
HMGB1-205ENST00000399494 BTCP35070 178 aa21.42■■□□□ 1.02
HMGB1-205ENST00000399494 UBE2MP61081 183 aaKnown RBP21.42■■□□□ 1.02
HMGB1-205ENST00000399494 OR52E5Q8NH55 327 aa21.42■■□□□ 1.02
HMGB1-205ENST00000399494 ZC4H2Q9NQZ6 224 aa21.42■■□□□ 1.02
HMGB1-205ENST00000399494 SUB1P53999 127 aaKnown RBP eCLIP21.41■■□□□ 1.025e-8■■■□□ 15
HMGB1-205ENST00000399494 AARDQ4LEZ3 155 aa21.41■■□□□ 1.02
HMGB1-205ENST00000399494 WDR12Q9GZL7 423 aaKnown RBP21.41■■□□□ 1.02
HMGB1-205ENST00000399494 WFDC10AQ9H1F0 79 aa21.41■■□□□ 1.02
HMGB1-205ENST00000399494 C21orf62Q9NYP8 219 aa21.41■■□□□ 1.02
HMGB1-205ENST00000399494 CACFD1Q9UGQ2 172 aa21.41■■□□□ 1.02
HMGB1-205ENST00000399494 FLVCR2Q9UPI3 526 aa21.41■■□□□ 1.02
HMGB1-205ENST00000399494 DUXBA0A1W2PPF3 345 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 CEBPZOSA8MTT3 80 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 OR11H12B2RN74 326 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 INS-IGF2F8WCM5 200 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 PLA2G10O15496 165 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 NXPH3O95157 252 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 FOLR2P14207 255 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 EDN2P20800 178 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 SMCO1Q147U7 214 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 ANKRD55Q3KP44 614 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 NMSQ5H8A3 153 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 PLET1Q6UQ28 207 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 UBAC2Q8NBM4 344 aa21.4■■□□□ 1.02
HMGB1-205ENST00000399494 SCARB1Q8WTV0 552 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms