RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 C1orf185Q5T7R7 199 aa8.57□□□□□ -1.04
PTCH1-204ENST00000375290 NEGR1Q7Z3B1 354 aa8.57□□□□□ -1.04
PTCH1-204ENST00000375290 MDKP21741 143 aaPredicted RBP8.56□□□□□ -1.04
PTCH1-204ENST00000375290 TMEM160Q9NX00 188 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 ASCL4Q6XD76 172 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 MESP1Q9BRJ9 268 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 KLF17Q5JT82 389 aaPredicted RBP8.56□□□□□ -1.04
PTCH1-204ENST00000375290 LYPD6BQ8NI32 183 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 RAX2Q96IS3 184 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 Q9H3A6 140 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 DOCK3Q8IZD9 2030 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 ATG2BQ96BY7 2078 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 MDC1Q14676 2089 aaKnown RBP8.56□□□□□ -1.04
PTCH1-204ENST00000375290 ZNF883P0CG24 379 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 KHDC1LQ5JSQ8 128 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 VKORC1L1Q8N0U8 176 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 RNF115Q9Y4L5 304 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 BRWD1Q9NSI6 2320 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 TRAV8-6A0A0B4J262 113 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 LINC01545Q5VT33 79 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 TMEM101Q96IK0 257 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 COX6A1P12074 109 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 BCL6BQ8N143 479 aaPredicted RBP8.56□□□□□ -1.04
PTCH1-204ENST00000375290 NPIPB3Q92617 1050 aa8.56□□□□□ -1.04
PTCH1-204ENST00000375290 C4orf51C9J302 202 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 EFEMP2O95967 443 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 CD69Q07108 199 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 MRPL14Q6P1L8 145 aaKnown RBP8.55□□□□□ -1.04
PTCH1-204ENST00000375290 TEX45Q8NA69 505 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 MEGF9Q9H1U4 602 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 UPK2O00526 184 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 R4GN57 208 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 A0A1B0GWJ7 208 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 TGIF1Q15583 401 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 CXCL1P09341 107 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 SRSF3P84103 164 aaKnown RBP8.55□□□□□ -1.04
PTCH1-204ENST00000375290 ATXN8Q156A1 80 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 PLPPR2Q96GM1 343 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 TRAV8-2A0A0B4J237 113 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 LYPD3O95274 346 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 TAL2Q16559 108 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 ABHD12Q8N2K0 398 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 MYOD1P15172 320 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 FAM219BQ5XKK7 198 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 FAM231DQ6ZW35 169 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 RTP5Q14D33 572 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 KIAA1644Q3SXP7 199 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 COA6Q5JTJ3 125 aaKnown RBP8.55□□□□□ -1.04
PTCH1-204ENST00000375290 TMEM42Q69YG0 159 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 TREML4Q6UXN2 200 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 TMEM74BQ9NUR3 256 aa8.55□□□□□ -1.04
PTCH1-204ENST00000375290 SYS1-DBNDD2H3BUS1 97 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 C1QCP02747 245 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 LAGE3Q14657 143 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 WDR82Q6UXN9 313 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 GFI1Q99684 422 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 PILRBQ9UKJ0 227 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 ATP5G2Q06055 141 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 Q5PR19 223 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 IFI27L1Q96BM0 104 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 SPSB2Q99619 263 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 PLA2G3Q9NZ20 509 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 LOC102724200A0A096LPH7 203 aaPredicted RBP8.54□□□□□ -1.04
PTCH1-204ENST00000375290 CKS1BP61024 79 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 DTX1Q86Y01 620 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 COQ2Q96H96 371 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 PLA2G2FQ9BZM2 168 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 LPAL2Q16609 132 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 PRSS8Q16651 343 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 ATOH7Q8N100 152 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 SLC22A18ASQ8N1D0 253 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 SCN5AQ14524 2016 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 DUTP33316 252 aaKnown RBP8.54□□□□□ -1.04
PTCH1-204ENST00000375290 ATP5G3P48201 142 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 SRSF2Q01130 221 aaKnown RBP8.54□□□□□ -1.04
PTCH1-204ENST00000375290 PAX2Q02962 417 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 OCIAD2Q56VL3 154 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 OR13C6PQ8NH95 151 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 TRAV8-4A0A0B4J246 113 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 TMEM170BQ5T4T1 132 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 Q6ZS52 159 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 IGKV3D-15A0A087WSY6 115 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 OOSP1A8MZH6 123 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 INAFM2P0DMQ5 153 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 IGFBP2P18065 325 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 YPEL3P61236 119 aaPredicted RBP8.54□□□□□ -1.04
PTCH1-204ENST00000375290 DDB2Q92466 427 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 FOXC2Q99958 501 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 SHISA7A6NL88 538 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 QRFPP83859 136 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 TRGV9Q99603 122 aa8.54□□□□□ -1.04
PTCH1-204ENST00000375290 TFF3Q07654 80 aa8.53□□□□□ -1.04
PTCH1-204ENST00000375290 CACNA1IQ9P0X4 2223 aa8.53□□□□□ -1.04
PTCH1-204ENST00000375290 LOXL3P58215 753 aa8.53□□□□□ -1.04
PTCH1-204ENST00000375290 PCOLCEQ15113 449 aa8.53□□□□□ -1.04
PTCH1-204ENST00000375290 ZNF562Q6V9R5 426 aa8.53□□□□□ -1.04
PTCH1-204ENST00000375290 OCC1Q8TAD7 63 aa8.53□□□□□ -1.04
PTCH1-204ENST00000375290 TRAV24A0A0B4J272 114 aa8.53□□□□□ -1.04
PTCH1-204ENST00000375290 ARHGEF17Q96PE2 2063 aaPredicted RBP8.53□□□□□ -1.04
PTCH1-204ENST00000375290 CELA2BP08218 269 aaPredicted RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms