RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 IGHV3-74A0A0B4J1X5 117 aa10.63□□□□□ -0.71
PRPF40A-201ENST00000354363 SMIM31A0A1B0GVY4 71 aa10.63□□□□□ -0.71
PRPF40A-201ENST00000354363 GNG7O60262 68 aa10.63□□□□□ -0.71
PRPF40A-201ENST00000354363 APOA1P02647 267 aa10.63□□□□□ -0.71
PRPF40A-201ENST00000354363 RCVRNP35243 200 aa10.63□□□□□ -0.71
PRPF40A-201ENST00000354363 PINX1Q96BK5 328 aaKnown RBP10.63□□□□□ -0.71
PRPF40A-201ENST00000354363 CMTM3Q96MX0 182 aa10.63□□□□□ -0.71
PRPF40A-201ENST00000354363 VCX3AQ9NNX9 186 aa10.63□□□□□ -0.71
PRPF40A-201ENST00000354363 A0A087WXM4 84 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 ERHP84090 104 aaKnown RBP10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 IZUMO4Q1ZYL8 232 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 GBGT1Q8N5D6 347 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 GATAD1Q8WUU5 269 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 PHLDA1Q8WV24 401 aaPredicted RBP10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 MPTX1A8MV57 137 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 ELK1P19419 428 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 NCS1P62166 190 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 SPINK9Q5DT21 86 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 TOMM20LQ6UXN7 152 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 TCF24Q7RTU0 167 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 GINS3Q9BRX5 216 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 VSIRQ9H7M9 311 aa10.62□□□□□ -0.71
PRPF40A-201ENST00000354363 M0QYG6 137 aa10.61□□□□□ -0.71
PRPF40A-201ENST00000354363 RND3P61587 244 aa10.61□□□□□ -0.71
PRPF40A-201ENST00000354363 LILRB2Q8N423 598 aa10.61□□□□□ -0.71
PRPF40A-201ENST00000354363 ST8SIA2Q92186 375 aa10.61□□□□□ -0.71
PRPF40A-201ENST00000354363 RARRES2Q99969 163 aa10.61□□□□□ -0.71
PRPF40A-201ENST00000354363 HPGDSO60760 199 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 IGKV1-5P01602 117 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 APOHP02749 345 aaPredicted RBP10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 CD5P06127 495 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 NPBWR1P48145 328 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 VBP1P61758 197 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 PAFAH1B2P68402 229 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 DUSP18Q8NEJ0 188 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 FUNDC2Q9BWH2 189 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 ZFAND3Q9H8U3 227 aa10.6□□□□□ -0.71
PRPF40A-201ENST00000354363 DNAH10Q8IVF4 4471 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 INS-IGF2F8WCM5 200 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 ST8SIA3O43173 380 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 TNFAIP8O95379 198 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 P0C879 139 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 PGAM2P15259 253 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 PI3P19957 117 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 ZNF600Q6ZNG1 722 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 RPP25LQ8N5L8 163 aaKnown RBP10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 OR11H2Q8NH07 326 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 ZNF486Q96H40 463 aaPredicted RBP10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 TP53RKQ96S44 253 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 MS4A6AQ9H2W1 248 aa10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 C11orf68Q9H3H3 251 aaKnown RBP10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 PUS1Q9Y606 427 aaKnown RBP eCLIP10.59□□□□□ -0.71
PRPF40A-201ENST00000354363 A0A0B4J293 547 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 IGHV3-66A0A0C4DH42 116 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 DFFBO76075 338 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 TMEM50AO95807 157 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 SNCAP37840 140 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 PIGPP57054 158 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 NANOS2P60321 138 aaKnown RBP10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 RNASE12Q5GAN4 147 aaKnown RBP10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 PVRIGQ6DKI7 326 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 LHFPL1Q86WI0 220 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 SLC35G3Q8N808 338 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 DNAH6Q9C0G6 4158 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 A0A1B0GU03 582 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 DNASE2O00115 360 aaPredicted RBP10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 CA1P00915 261 aaPredicted RBP10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 RNASE2P10153 161 aaKnown RBP10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 AKR1C2P52895 323 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 DEFB131AP59861 70 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 RNASE10Q5GAN6 216 aaKnown RBP10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 LGALS9CQ6DKI2 356 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 FAM24BQ8N5W8 94 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 C11orf45Q8TAV5 145 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 KLK11Q9UBX7 282 aa10.58□□□□□ -0.72
PRPF40A-201ENST00000354363 TRAV2A0A0B4J234 112 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 FAM25AB3EWG3 89 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 FAM25CB3EWG5 89 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 FAM25GB3EWG6 89 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 DEDDO75618 318 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 IFNA17P01571 189 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 LEMD1Q68G75 181 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 MRPL36Q9P0J6 103 aaKnown RBP10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 FBXL17Q9UF56 701 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 VPS13DQ5THJ4 4388 aa10.57□□□□□ -0.72
PRPF40A-201ENST00000354363 C3orf85A0A1B0GTC6 90 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 CORTO00230 105 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 CD3DP04234 171 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 ETV6P41212 452 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 RORCP51449 518 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 SUB1P53999 127 aaKnown RBP eCLIP10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 RPL11P62913 178 aaKnown RBP10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 RBMS2Q15434 407 aaKnown RBP10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 ARRDC1Q8N5I2 433 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 OR52I2Q8NH67 350 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 PDCD10Q9BUL8 212 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 MFFQ9GZY8 342 aa10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 FNDC4Q9H6D8 234 aaPredicted RBP10.56□□□□□ -0.72
PRPF40A-201ENST00000354363 A0A0G2JRQ6 117 aa10.55□□□□□ -0.72
PRPF40A-201ENST00000354363 DEFB4AO15263 64 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms