RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 OR4F4Q96R69 305 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 THYN1Q9P016 225 aa17.12■□□□□ 0.33
SHMT1-203ENST00000354098 CYB5BO43169 146 aa17.11■□□□□ 0.33
SHMT1-203ENST00000354098 HTR2BP41595 481 aa17.11■□□□□ 0.33
SHMT1-203ENST00000354098 SLC24A4Q8NFF2 622 aa17.11■□□□□ 0.33
SHMT1-203ENST00000354098 OR11H1Q8NG94 326 aa17.11■□□□□ 0.33
SHMT1-203ENST00000354098 CCL24O00175 119 aa17.1■□□□□ 0.33
SHMT1-203ENST00000354098 WRBO00258 174 aa17.1■□□□□ 0.33
SHMT1-203ENST00000354098 MED6O75586 246 aa17.1■□□□□ 0.33
SHMT1-203ENST00000354098 TRBV12-3P01733 135 aa17.1■□□□□ 0.33
SHMT1-203ENST00000354098 MBPP02686 304 aaPredicted RBP17.1■□□□□ 0.33
SHMT1-203ENST00000354098 SUB1P53999 127 aaKnown RBP eCLIP17.1■□□□□ 0.33
SHMT1-203ENST00000354098 PVRIGQ6DKI7 326 aa17.1■□□□□ 0.33
SHMT1-203ENST00000354098 K7EIM0 57 aa17.1■□□□□ 0.33
SHMT1-203ENST00000354098 IFNA10P01566 189 aa17.1■□□□□ 0.33
SHMT1-203ENST00000354098 OR1N2Q8NGR9 330 aa17.1■□□□□ 0.33
SHMT1-203ENST00000354098 PINX1Q96BK5 328 aaKnown RBP17.1■□□□□ 0.33
SHMT1-203ENST00000354098 IGHV4OR15-8A0A075B7B6 117 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 A0A087WW49 117 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 I3L2K1 104 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 IGHV3-48P01763 117 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 H2BFSP57053 126 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 IL15RAQ13261 267 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 C2orf83Q53S99 150 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 SCARB1Q8WTV0 552 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 WDR89Q96FK6 387 aaPredicted RBP17.09■□□□□ 0.33
SHMT1-203ENST00000354098 CCDC140Q96MF4 163 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 U3KQ87 197 aa17.09■□□□□ 0.33
SHMT1-203ENST00000354098 SSSCA1O60232 199 aa17.08■□□□□ 0.32
SHMT1-203ENST00000354098 MT-CO2P00403 227 aa17.08■□□□□ 0.32
SHMT1-203ENST00000354098 NPY1RP25929 384 aa17.08■□□□□ 0.32
SHMT1-203ENST00000354098 EEF1AKMT3Q96AZ1 226 aa17.08■□□□□ 0.32
SHMT1-203ENST00000354098 CXorf58Q96LI9 332 aa17.08■□□□□ 0.32
SHMT1-203ENST00000354098 PEF1Q9UBV8 284 aaKnown RBP17.08■□□□□ 0.32
SHMT1-203ENST00000354098 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.07■□□□□ 0.32
SHMT1-203ENST00000354098 TMEM50AO95807 157 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 PF4P02776 101 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 HSPB1P04792 205 aaKnown RBP17.07■□□□□ 0.32
SHMT1-203ENST00000354098 MLANAQ16655 118 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 ZNF502Q8TBZ5 544 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 VN1R17PQ8TDU5 208 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 MGAT4CQ9UBM8 478 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 RCL1Q9Y2P8 373 aaKnown RBP17.07■□□□□ 0.32
SHMT1-203ENST00000354098 MYCNOSP40205 109 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 ZNF616Q08AN1 781 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 FHL3Q13643 280 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 CLEC19AQ6UXS0 136 aa17.07■□□□□ 0.32
SHMT1-203ENST00000354098 CIB3Q96Q77 187 aaPredicted RBP17.07■□□□□ 0.32
SHMT1-203ENST00000354098 FNDC4Q9H6D8 234 aaPredicted RBP17.07■□□□□ 0.32
SHMT1-203ENST00000354098 PPP5D1E7EU14 171 aa17.06■□□□□ 0.32
SHMT1-203ENST00000354098 H3BP45 60 aa17.06■□□□□ 0.32
SHMT1-203ENST00000354098 CXCL3P19876 107 aa17.06■□□□□ 0.32
SHMT1-203ENST00000354098 PAX9P55771 341 aa17.06■□□□□ 0.32
SHMT1-203ENST00000354098 PRR31Q5SQ13 230 aa17.06■□□□□ 0.32
SHMT1-203ENST00000354098 DPF1Q92782 380 aa17.06■□□□□ 0.32
SHMT1-203ENST00000354098 RANGRFQ9HD47 186 aaPredicted RBP17.06■□□□□ 0.32
SHMT1-203ENST00000354098 LSM5Q9Y4Y9 91 aaKnown RBP17.06■□□□□ 0.32
SHMT1-203ENST00000354098 WNK1Q9H4A3 2382 aa17.06■□□□□ 0.32
SHMT1-203ENST00000354098 TRBV7-1A0A0A6YYK4 115 aa17.05■□□□□ 0.32
SHMT1-203ENST00000354098 C15orf62A8K5M9 175 aa17.05■□□□□ 0.32
SHMT1-203ENST00000354098 LINC01619G3V211 115 aa17.05■□□□□ 0.32
SHMT1-203ENST00000354098 K7EPK0 472 aa17.05■□□□□ 0.32
SHMT1-203ENST00000354098 RAB32Q13637 225 aa17.05■□□□□ 0.32
SHMT1-203ENST00000354098 OR4C12Q96R67 309 aa17.05■□□□□ 0.32
SHMT1-203ENST00000354098 ZC4H2Q9NQZ6 224 aa17.05■□□□□ 0.32
SHMT1-203ENST00000354098 C21orf62Q9NYP8 219 aa17.05■□□□□ 0.32
SHMT1-203ENST00000354098 F8W735 103 aaPredicted RBP17.04■□□□□ 0.32
SHMT1-203ENST00000354098 CORTO00230 105 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 CLEC3BP05452 202 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 OPRK1P41145 380 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 SLURP1P55000 103 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 FCN2Q15485 313 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 SPANXN5Q5MJ07 72 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 MED28Q9H204 178 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 PSENENQ9NZ42 101 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 PAIP2BQ9ULR5 123 aaKnown RBP17.04■□□□□ 0.32
SHMT1-203ENST00000354098 PKD1L1Q8TDX9 2849 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 BMPR1BO00238 502 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 GPR183P32249 361 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 S100A10P60903 97 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 LINC00482Q8N8I6 264 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 UBAC2Q8NBM4 344 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 OR11H7Q8NGC8 314 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 SMIM8Q96KF7 97 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 NMES1Q9C002 83 aa17.04■□□□□ 0.32
SHMT1-203ENST00000354098 MRPL36Q9P0J6 103 aaKnown RBP17.04■□□□□ 0.32
SHMT1-203ENST00000354098 RNASEH2CQ8TDP1 164 aaKnown RBP17.03■□□□□ 0.32
SHMT1-203ENST00000354098 RAB40CQ96S21 281 aa17.03■□□□□ 0.32
SHMT1-203ENST00000354098 OR2T8A6NH00 312 aa17.02■□□□□ 0.32
SHMT1-203ENST00000354098 IFNA4P05014 189 aa17.02■□□□□ 0.32
SHMT1-203ENST00000354098 OR8U8P0C7N1 319 aa17.02■□□□□ 0.32
SHMT1-203ENST00000354098 HOXD3P31249 432 aaPredicted RBP17.02■□□□□ 0.32
SHMT1-203ENST00000354098 NOXA1Q86UR1 476 aa17.02■□□□□ 0.32
SHMT1-203ENST00000354098 ARL3P36405 182 aa17.01■□□□□ 0.31
SHMT1-203ENST00000354098 ATP5IP56385 69 aaPredicted RBP17.01■□□□□ 0.31
SHMT1-203ENST00000354098 LRRC37A5PQ49AS3 106 aa17.01■□□□□ 0.31
SHMT1-203ENST00000354098 Q56UQ5 140 aa17.01■□□□□ 0.31
SHMT1-203ENST00000354098 TREML4Q6UXN2 200 aa17.01■□□□□ 0.31
SHMT1-203ENST00000354098 DLX4Q92988 240 aaPredicted RBP17.01■□□□□ 0.31
SHMT1-203ENST00000354098 C11orf1Q9H5F2 150 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms