RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 ERHP84090 104 aaKnown RBP11.65□□□□□ -0.54
VAPA-201ENST00000340541 NMSQ5H8A3 153 aa11.65□□□□□ -0.54
VAPA-201ENST00000340541 PLET1Q6UQ28 207 aa11.65□□□□□ -0.54
VAPA-201ENST00000340541 UNQ9165/PRO28630Q6UXU0 137 aa11.65□□□□□ -0.54
VAPA-201ENST00000340541 TMED4Q7Z7H5 227 aa11.65□□□□□ -0.54
VAPA-201ENST00000340541 OR52E5Q8NH55 327 aa11.65□□□□□ -0.54
VAPA-201ENST00000340541 CHRDL1Q9BU40 450 aa11.65□□□□□ -0.54
VAPA-201ENST00000340541 ZNF436Q9C0F3 470 aaPredicted RBP11.65□□□□□ -0.54
VAPA-201ENST00000340541 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.65□□□□□ -0.54
VAPA-201ENST00000340541 STAB2Q8WWQ8 2551 aa11.65□□□□□ -0.55
VAPA-201ENST00000340541 A0A0B4J2A0 478 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 OR2T8A6NH00 312 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 A6NHS1 94 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 RNASE2P10153 161 aaKnown RBP11.64□□□□□ -0.55
VAPA-201ENST00000340541 FOLR2P14207 255 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 CCR6P51684 374 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 SPCS3P61009 180 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 BSXQ3C1V8 233 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 FAM106AQ4KMX7 169 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 TMEM128Q5BJH2 165 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 TRIQKQ629K1 86 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 LYZL2Q7Z4W2 148 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 Q8N1Y9 231 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 CACNG8Q8WXS5 425 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 MISP3Q96FF7 219 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 BSCL2Q96G97 398 aaPredicted RBP11.64□□□□□ -0.55
VAPA-201ENST00000340541 ASCL2Q99929 193 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 PDCD10Q9BUL8 212 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 SHPKQ9UHJ6 478 aa11.64□□□□□ -0.55
VAPA-201ENST00000340541 IGHV3-35A0A0C4DH35 117 aa11.63□□□□□ -0.55
VAPA-201ENST00000340541 MT-CO2P00403 227 aa11.63□□□□□ -0.55
VAPA-201ENST00000340541 CTSGP08311 255 aa11.63□□□□□ -0.55
VAPA-201ENST00000340541 IL7P13232 177 aa11.63□□□□□ -0.55
VAPA-201ENST00000340541 CBLN1P23435 193 aa11.63□□□□□ -0.55
VAPA-201ENST00000340541 FCGR2BP31994 310 aaPredicted RBP11.63□□□□□ -0.55
VAPA-201ENST00000340541 BTCP35070 178 aa11.63□□□□□ -0.55
VAPA-201ENST00000340541 DEFB114Q30KQ6 69 aa11.63□□□□□ -0.55
VAPA-201ENST00000340541 CD300EQ496F6 205 aaPredicted RBP11.63□□□□□ -0.55
VAPA-201ENST00000340541 SPSB3Q6PJ21 355 aa11.63□□□□□ -0.55
VAPA-201ENST00000340541 ZNF320A2RRD8 509 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 NAP1L6A6NFF2 107 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 IGHV3-48P01763 117 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 ANXA3P12429 323 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 SNCAP37840 140 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 HOXA1P49639 335 aaPredicted RBP11.62□□□□□ -0.55
VAPA-201ENST00000340541 SRPXP78539 464 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 RBMS2Q15434 407 aaKnown RBP11.62□□□□□ -0.55
VAPA-201ENST00000340541 ANKRD55Q3KP44 614 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 TM4SF20Q53R12 229 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 Q56UQ5 140 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 LCN12Q6JVE5 192 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 LGI3Q8N145 548 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 OR2K2Q8NGT1 345 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 TMEM190Q8WZ59 177 aa11.62□□□□□ -0.55
VAPA-201ENST00000340541 LINC00854A0A1B0GVQ3 168 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 NDUFB6O95139 128 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 C8orf88P0DMB2 117 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 SULT1A3P0DMM9 295 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 SULT1A4P0DMN0 295 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 INPP1P49441 399 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 ELLP55199 621 aaPredicted RBP11.61□□□□□ -0.55
VAPA-201ENST00000340541 PPP1R1AQ13522 171 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 CENPSQ8N2Z9 138 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 LRTM2Q8N967 370 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 UBAC2Q8NBM4 344 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 MUC7Q8TAX7 377 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 PINX1Q96BK5 328 aaKnown RBP11.61□□□□□ -0.55
VAPA-201ENST00000340541 TXN2Q99757 166 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 MLXQ9UH92 298 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 RYR3Q15413 4870 aa11.61□□□□□ -0.55
VAPA-201ENST00000340541 ZNF785A8K8V0 405 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 NDUFA4O00483 81 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 PLA2G10O15496 165 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 SFT2D2O95562 160 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 VAMP1P23763 118 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 MFAP4P55083 255 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 CNPY1Q3B7I2 92 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 LINC00299Q6ZSB3 139 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 SBSPONQ8IVN8 264 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 UXS1Q8NBZ7 420 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 DYNLRB2Q8TF09 96 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 TMEM170AQ8WVE7 144 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 FNDC4Q9H6D8 234 aaPredicted RBP11.6□□□□□ -0.55
VAPA-201ENST00000340541 ENY2Q9NPA8 101 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 GAR1Q9NY12 217 aaKnown RBP11.6□□□□□ -0.55
VAPA-201ENST00000340541 TECRQ9NZ01 308 aaKnown RBP11.6□□□□□ -0.55
VAPA-201ENST00000340541 HSPB7Q9UBY9 170 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 UFC1Q9Y3C8 167 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 SELENOKQ9Y6D0 94 aa11.6□□□□□ -0.55
VAPA-201ENST00000340541 DUXBA0A1W2PPF3 345 aa11.59□□□□□ -0.55
VAPA-201ENST00000340541 PITX3O75364 302 aa11.59□□□□□ -0.55
VAPA-201ENST00000340541 NXPH3O95157 252 aa11.59□□□□□ -0.55
VAPA-201ENST00000340541 SUB1P53999 127 aaKnown RBP eCLIP11.59□□□□□ -0.558e-15■■□□□ 14.2
VAPA-201ENST00000340541 SMCO1Q147U7 214 aa11.59□□□□□ -0.55
VAPA-201ENST00000340541 CASC10Q5T4H9 136 aa11.59□□□□□ -0.55
VAPA-201ENST00000340541 MARC2Q969Z3 335 aa11.59□□□□□ -0.55
VAPA-201ENST00000340541 RCHY1Q96PM5 261 aa11.59□□□□□ -0.55
VAPA-201ENST00000340541 C7orf50Q9BRJ6 194 aaKnown RBP11.59□□□□□ -0.55
VAPA-201ENST00000340541 ZMAT4Q9H898 229 aa11.59□□□□□ -0.55
VAPA-201ENST00000340541 PALMDQ9NP74 551 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms