RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 MFSD2BA6NFX1 497 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 SMAD7O15105 426 aaKnown RBP3.28□□□□□ -1.88
MCF2-201ENST00000338585 GATA3P23771 443 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 MAS1LP35410 378 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 CAMLGP49069 296 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 RAB2AP61019 212 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 SRSF3P84103 164 aaKnown RBP3.28□□□□□ -1.88
MCF2-201ENST00000338585 AANATQ16613 207 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 PRSS57Q6UWY2 283 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 SSX7Q7RTT5 188 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 OR2T6Q8NHC8 308 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 ABHD5Q8WTS1 349 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 ANAPC16Q96DE5 110 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 MGST2Q99735 147 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 HSPB9Q9BQS6 159 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 PARD6GQ9BYG4 376 aaPredicted RBP3.28□□□□□ -1.88
MCF2-201ENST00000338585 RPRMQ9NS64 109 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 MRPL36Q9P0J6 103 aaKnown RBP3.28□□□□□ -1.88
MCF2-201ENST00000338585 FAM96BQ9Y3D0 163 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 ITPR3Q14573 2671 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 IGKV1OR2-108A0A075B7D4 117 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 IGHV7-81A0A0B4J1V7 117 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 ANKRD34BA5PLL1 514 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 LINC01548A6NM66 108 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 H3BUX3 64 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 CCL20P78556 96 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 AKR1C1Q04828 323 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 GAMTQ14353 236 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 ZNF726P1Q15940 193 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 LY6EQ16553 131 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 GCSAMLQ5JQS6 135 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 AKR1C8PQ5T2L2 129 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 ASPHD1Q5U4P2 390 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 LRRC20Q8TCA0 184 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 SAT2Q96F10 170 aaPredicted RBP3.28□□□□□ -1.88
MCF2-201ENST00000338585 MISP3Q96FF7 219 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 SSX3Q99909 188 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 PSMG3Q9BT73 122 aaPredicted RBP3.28□□□□□ -1.88
MCF2-201ENST00000338585 TMEM231Q9H6L2 316 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 PARP11Q9NR21 331 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 MED9Q9NWA0 146 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 PFDN2Q9UHV9 154 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 LSM4Q9Y4Z0 139 aaKnown RBP3.28□□□□□ -1.88
MCF2-201ENST00000338585 TLN2Q9Y4G6 2542 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 UMAD1C9J7I0 102 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 EGR2P11161 476 aaPredicted RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 GATA2P23769 480 aaPredicted RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 OPRK1P41145 380 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 BLOC1S1P78537 153 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 DEFA5Q01523 94 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 CD69Q07108 199 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 FFAR4Q5NUL3 377 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 MIC13Q5XKP0 118 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 ZNF562Q6V9R5 426 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 SLC16A13Q7RTY0 426 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 CENPVQ7Z7K6 275 aaPredicted RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 RPP25LQ8N5L8 163 aaKnown RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 ARPC1AQ92747 370 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 ACY3Q96HD9 319 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 SLC25A33Q9BSK2 321 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 GGACTQ9BVM4 153 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 GGTLC1Q9BX51 225 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 MEGF9Q9H1U4 602 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 F11RQ9Y624 299 aaKnown RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 TRIM77I1YAP6 450 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 I3L521 148 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 J3QLI3 93 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 HMGB3O15347 200 aaKnown RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 YIF1AO95070 293 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 SCAF4O95104 1147 aaKnown RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 FSHBP01225 129 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 AMY1AP04745 511 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 FBP1P09467 338 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 H2AFB1P0C5Y9 115 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 RAB5CP51148 216 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 SUB1P53999 127 aaKnown RBP eCLIP3.27□□□□□ -1.89
MCF2-201ENST00000338585 DEFB112Q30KQ8 113 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 TMEM41BQ5BJD5 291 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 TOR2AQ5JU69 321 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 PVRIGQ6DKI7 326 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 SPSB3Q6PJ21 355 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 LCN15Q6UWW0 184 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 IL17RELQ6ZVW7 336 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 HSD17B13Q7Z5P4 300 aaPredicted RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 C5orf56Q8N8D9 126 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 ZNF709Q8N972 641 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 ZNF114Q8NC26 417 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 LFNGQ8NES3 379 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 OR1P1Q8NH06 330 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 LYPD6BQ8NI32 183 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 SFT2D1Q8WV19 159 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 NPIPB3Q92617 1050 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 MARC2Q969Z3 335 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 RCC1LQ96I51 464 aaKnown RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 RASL11BQ9BPW5 248 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 WNT10AQ9GZT5 417 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 GSX1Q9H4S2 264 aaPredicted RBP3.27□□□□□ -1.89
MCF2-201ENST00000338585 SLC25A22Q9H936 323 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 NPVFQ9HCQ7 196 aa3.27□□□□□ -1.89
MCF2-201ENST00000338585 TIMM9Q9Y5J7 89 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms