RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 TMEM86BQ8N661 226 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 HSD17B11Q8NBQ5 300 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 SCGB1C1Q8TD33 95 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 ZNF48Q96MX3 618 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 VPREB3Q9UKI3 123 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 TLN2Q9Y4G6 2542 aa11.78□□□□□ -0.52
CCDC88C-202ENST00000334448 FLNBO75369 2602 aaKnown RBP11.77□□□□□ -0.52
CCDC88C-202ENST00000334448 UMAD1C9J7I0 102 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 IGHV4-59P01825 116 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 IGHG2P01859 326 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 IGF1P05019 195 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 NMBP08949 121 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 FAM157CP0CG43 387 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 FOSL1P15407 271 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 SULT1A2P50226 295 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 SERF2P84101 59 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 ABHD5Q8WTS1 349 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 NPVFQ9HCQ7 196 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 FBXO7Q9Y3I1 522 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 DMRT1Q9Y5R6 373 aa11.77□□□□□ -0.53
CCDC88C-202ENST00000334448 BTBD17A6NE02 478 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 TRIM77I1YAP6 450 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 BRI3O95415 125 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 HNF1AP20823 631 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 AKIRIN2Q53H80 203 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 ETFRF1Q6IPR1 90 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 SLC25A24Q6NUK1 477 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 TREML4Q6UXN2 200 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 SLC16A13Q7RTY0 426 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 TMEM144Q7Z5S9 345 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 FAM110DQ8TAY7 271 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 RNF141Q8WVD5 230 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 SAT2Q96F10 170 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 SH3BGRL3Q9H299 93 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 FNDC4Q9H6D8 234 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 CELSR1Q9NYQ6 3014 aa11.76□□□□□ -0.53
CCDC88C-202ENST00000334448 IGLV11-55A0A075B6I3 123 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 ATP6V0E1O15342 81 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 CYB5BO43169 146 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 REG1AP05451 166 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 RAB14P61106 215 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 RUNX1Q01196 453 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 SCGB2A2Q13296 93 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 LY6EQ16553 131 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 NDUFA5Q16718 116 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 BTNL8Q6UX41 500 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 FAM103A1Q9BTL3 118 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 TMUB1Q9BVT8 246 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 NPCDR1Q9BY65 106 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 KCNIP2Q9NS61 270 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 PLA2G2EQ9NZK7 142 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 ACANP16112 2415 aa11.75□□□□□ -0.53
CCDC88C-202ENST00000334448 MXRA5Q9NR99 2828 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 PLXNB1O43157 2135 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 I3L2K1 104 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 FGF7P21781 194 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 GAMTQ14353 236 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 FAM74A1Q5RGS3 127 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 TEPPQ6URK8 271 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 DPPA3Q6W0C5 159 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 THAP8Q8NA92 274 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 TMEM116Q8NCL8 245 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 LFNGQ8NES3 379 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 C22orf15Q8WYQ4 148 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 SLC35E1Q96K37 410 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 FANCD2OSQ96PS1 177 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 WNT10AQ9GZT5 417 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 PARP11Q9NR21 331 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 YAE1D1Q9NRH1 226 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 MED9Q9NWA0 146 aa11.74□□□□□ -0.53
CCDC88C-202ENST00000334448 LINC00862A6NCI5 91 aa11.73□□□□□ -0.53
CCDC88C-202ENST00000334448 C17orf112F2Z3M2 114 aa11.73□□□□□ -0.53
CCDC88C-202ENST00000334448 HIST1H1BP16401 226 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-202ENST00000334448 SRP14P37108 136 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-202ENST00000334448 OPRK1P41145 380 aa11.73□□□□□ -0.53
CCDC88C-202ENST00000334448 MGST2Q99735 147 aa11.73□□□□□ -0.53
CCDC88C-202ENST00000334448 RSG1Q9BU20 258 aa11.73□□□□□ -0.53
CCDC88C-202ENST00000334448 GGTLC1Q9BX51 225 aa11.73□□□□□ -0.53
CCDC88C-202ENST00000334448 K7EIM0 57 aa11.72□□□□□ -0.53
CCDC88C-202ENST00000334448 APELAP0DMC3 54 aa11.72□□□□□ -0.53
CCDC88C-202ENST00000334448 AKR1C1Q04828 323 aa11.72□□□□□ -0.53
CCDC88C-202ENST00000334448 RAB31Q13636 194 aa11.72□□□□□ -0.53
CCDC88C-202ENST00000334448 C19orf35Q6ZS72 473 aa11.72□□□□□ -0.53
CCDC88C-202ENST00000334448 IGKV1OR2-108A0A075B7D4 117 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 TRBV9A0A0B4J1U6 114 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 TRAV41A0A0B4J266 112 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 SMCO3A2RU48 225 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 H3BUA1 57 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 CLDN34H7C241 214 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 AP4M1O00189 453 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 HOXA3O43365 443 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 MT-CO2P00403 227 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 MBP02144 154 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 DEFA4P12838 97 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 FCGR2BP31994 310 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 RPL29P47914 159 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 CAMLGP49069 296 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 BLOC1S1P78537 153 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 PRR20EP86478 221 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 PRR20CP86479 221 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms