RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 TMEM105Q8N8V8 129 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 SPTBP11277 2137 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 TRAV5A0A0B4J249 113 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 LTBRP36941 435 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 TM4SF5O14894 197 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 OR9G9P0C7N8 305 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 GZMBP10144 247 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 CSRP2Q16527 193 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 CFAP161Q6P656 301 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 VSIRQ9H7M9 311 aa11.34□□□□□ -0.59
CHRFAM7A-201ENST00000299847 RNF222A6NCQ9 220 aa11.33□□□□□ -0.59
CHRFAM7A-201ENST00000299847 MEF2CQ06413 473 aaPredicted RBP11.33□□□□□ -0.59
CHRFAM7A-201ENST00000299847 NR2C2APQ86WQ0 139 aa11.33□□□□□ -0.59
CHRFAM7A-201ENST00000299847 VWCEQ96DN2 955 aa11.33□□□□□ -0.59
CHRFAM7A-201ENST00000299847 ZNF236Q9UL36 1845 aa11.33□□□□□ -0.59
CHRFAM7A-201ENST00000299847 IQCF6A8MYZ5 107 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TEX29Q8N6K0 151 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 PTPRZ1P23471 2315 aaPredicted RBP11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 SERF1AO75920 110 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 CNTFRP26992 372 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 FXYD7P58549 80 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 FNDC4Q9H6D8 234 aaPredicted RBP11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 KNTC1P50748 2209 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 IZUMO1RA6ND01 250 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 RIPPLY3P57055 190 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 LRTM2Q8N967 370 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 SBF2Q86WG5 1849 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 A0A0A6YYD4 124 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 KLRD1Q13241 179 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 C5orf24Q7Z6I8 188 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TMEM219Q86XT9 240 aa11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 GTF3AQ92664 365 aaKnown RBP11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 PEF1Q9UBV8 284 aaKnown RBP11.33□□□□□ -0.6
CHRFAM7A-201ENST00000299847 H7C1H1 209 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TMEM42Q69YG0 159 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 NEU4Q8WWR8 484 aaPredicted RBP11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 PRR32B1ATL7 298 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 NBR2O15453 112 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 RPL23P62829 140 aaKnown RBP11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TTC9CQ8N5M4 171 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 OR5A1Q8NGJ0 315 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TNS1Q9HBL0 1735 aaKnown RBP11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 A0A1B0GTI1 187 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 PCP4P48539 62 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ZNF585BQ52M93 769 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 GDF15Q99988 308 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 CA7P43166 264 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ZNF415Q09FC8 603 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ZIC4Q8N9L1 334 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 DPH3P1Q9H4G8 78 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 A0A0G2JLM5 398 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ASCL2Q99929 193 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 WFDC1Q9HC57 220 aa11.32□□□□□ -0.6
CHRFAM7A-201ENST00000299847 IGHV1-18A0A0C4DH31 117 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 H3BUT2 72 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 VENTXO95231 258 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 UCP1P25874 307 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 CSRP3P50461 194 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 FOXF2Q12947 444 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 RTN4RL2Q86UN3 420 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 LINC00312Q9Y6C7 94 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TRAV2A0A0B4J234 112 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TMEM250H0YL14 139 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 WBP1Q96G27 269 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 SPCS1Q9Y6A9 102 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TRAV40A0A0B4J280 105 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 H3BRM9 83 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 UPK2O00526 184 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 MORN2Q502X0 79 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 VKORC1Q9BQB6 163 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ZNF319Q9P2F9 582 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 MLNRO43193 412 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 RHOGP84095 191 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TMEM30BQ3MIR4 351 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 PAPPA-AS1Q5QFB9 102 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ORMDL3Q8N138 153 aa11.31□□□□□ -0.6
CHRFAM7A-201ENST00000299847 IGKV1D-8A0A087WSZ0 117 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 IGKV2-40A0A087WW87 121 aaPredicted RBP11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 IGKV2D-40P01614 121 aaPredicted RBP11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 RNF126Q9BV68 326 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 GSN-AS1Q9NRJ2 163 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 PATJQ8NI35 1801 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TMEM167AQ8TBQ9 72 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 SELLP14151 372 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 IGFBP3P17936 291 aaPredicted RBP11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 IGKV1-9A0A0C4DH69 117 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 FOXG1P55316 489 aaPredicted RBP11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 PLXNA1Q9UIW2 1896 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TCRBV4S1A1TA0A5B7 111 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 TIMM23O14925 209 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ST20Q9HBF5 79 aa11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 LSM4Q9Y4Z0 139 aaKnown RBP11.3□□□□□ -0.6
CHRFAM7A-201ENST00000299847 CHD5Q8TDI0 1954 aa11.29□□□□□ -0.6
CHRFAM7A-201ENST00000299847 ATP5LO75964 103 aa11.29□□□□□ -0.6
CHRFAM7A-201ENST00000299847 BTCP35070 178 aa11.29□□□□□ -0.6
CHRFAM7A-201ENST00000299847 RPL15P61313 204 aaKnown RBP11.29□□□□□ -0.6
CHRFAM7A-201ENST00000299847 CCL20P78556 96 aa11.29□□□□□ -0.6
CHRFAM7A-201ENST00000299847 LINC00114Q6XXX2 140 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms