RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 hCG_38984A0A1B0GV85 526 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 DIRC2Q96SL1 478 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 C11orf1Q9H5F2 150 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 MDC1Q14676 2089 aaKnown RBP5.43□□□□□ -1.54
VPS35-201ENST00000299138 IGKV1-9A0A0C4DH69 117 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 CRYBB3P26998 211 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 MRPS11P82912 194 aaKnown RBP5.43□□□□□ -1.54
VPS35-201ENST00000299138 TMEM14EPQ6UXP3 125 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 TMUB1Q9BVT8 246 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 PLA2G3Q9NZ20 509 aa5.43□□□□□ -1.54
VPS35-201ENST00000299138 SAA2-SAA4A0A096LPE2 208 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 GAGE7O76087 117 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 GAGE12FP0CL80 117 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 GAGE12GP0CL81 117 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 GAGE12IP0CL82 117 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 EGR1P18146 543 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 INO80CQ6PI98 192 aaPredicted RBP5.42□□□□□ -1.54
VPS35-201ENST00000299138 SLC23A3Q6PIS1 610 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 OR4X2Q8NGF9 303 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 SH3BGRL3Q9H299 93 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 TRAV8-3A0A0A6YYJ7 113 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 C10orf142B7Z368 130 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 AMBPP02760 352 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 SELENOTP62341 195 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 UBE2V1Q13404 147 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 LCNL1Q6ZST4 164 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 VSTM2AQ8TAG5 236 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 CCL28Q9NRJ3 127 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 RPRMQ9NS64 109 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 TSSC4Q9Y5U2 329 aaPredicted RBP5.42□□□□□ -1.54
VPS35-201ENST00000299138 LOC102723996A0A087X1L8 192 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 TRAV13-1A0A0B4J241 112 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 CLDN14O95500 239 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 GABRG2P18507 467 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 CA7P43166 264 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 EBLN2Q6P2I7 272 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 PHF7Q9BWX1 381 aaPredicted RBP5.42□□□□□ -1.54
VPS35-201ENST00000299138 C1QTNF5Q9BXJ0 243 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 OR2H1Q9GZK4 316 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 MRPL27Q9P0M9 148 aaKnown RBP5.42□□□□□ -1.54
VPS35-201ENST00000299138 PLXNB3Q9ULL4 1909 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 H3BRM9 83 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 TGFBR3LH3BV60 316 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 ARL14EPLP0DKL9 152 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 LEPP41159 167 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 TCTEX1D4Q5JR98 221 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 OR5P3Q8WZ94 311 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 C3AR1Q16581 482 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 ECSCRQ19T08 205 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 CCL4L1Q8NHW4 92 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 NRN1Q9NPD7 142 aa5.42□□□□□ -1.54
VPS35-201ENST00000299138 SYNGR3O43761 229 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 PGLYRP1O75594 196 aaPredicted RBP5.41□□□□□ -1.54
VPS35-201ENST00000299138 MYF5P13349 255 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 IL11P20809 199 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 MRPL23Q16540 153 aaKnown RBP5.41□□□□□ -1.54
VPS35-201ENST00000299138 ZNF774Q6NX45 483 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 FAM90A1Q86YD7 464 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 DDB2Q92466 427 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 PNRC2Q9NPJ4 139 aaKnown RBP5.41□□□□□ -1.54
VPS35-201ENST00000299138 C2CD4DB7Z1M9 353 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 ZIC3O60481 467 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 HYPMO75409 117 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 ANXA2RQ3ZCQ2 193 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.41□□□□□ -1.54
VPS35-201ENST00000299138 RPP25Q9BUL9 199 aaKnown RBP5.41□□□□□ -1.54
VPS35-201ENST00000299138 A0A0A6YYD4 124 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 KLRC4-KLRK1H3BQV0 150 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 IFNL4K9M1U5 179 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 ZNF501Q96CX3 271 aaPredicted RBP5.41□□□□□ -1.54
VPS35-201ENST00000299138 VWCEQ96DN2 955 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 SMAD7O15105 426 aaKnown RBP5.41□□□□□ -1.54
VPS35-201ENST00000299138 IGKV3-20P01619 116 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 PSG3Q16557 428 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 GUSBP11Q6P575 273 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 CFAP161Q6P656 301 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 CCL17Q92583 94 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 C22orf46C9J442 243 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 LAMTOR5O43504 91 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 SERF1AO75920 110 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 SOX8P57073 446 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 SIGLEC12Q96PQ1 595 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 GNB1LQ9BYB4 327 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 ST20Q9HBF5 79 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 OSTCQ9NRP0 149 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 WDR83OSQ9Y284 106 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 U3KQE9 123 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 ALPK3Q96L96 1907 aa5.41□□□□□ -1.54
VPS35-201ENST00000299138 A0A0U1RQV1 116 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 WIPF3A6NGB9 483 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 MLNRO43193 412 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 CCL2P13500 99 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 RPL23P62829 140 aaKnown RBP5.4□□□□□ -1.54
VPS35-201ENST00000299138 RBMY1FQ15415 496 aaKnown RBP5.4□□□□□ -1.54
VPS35-201ENST00000299138 PAPPA-AS1Q5QFB9 102 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 PTCRAQ6ISU1 281 aaPredicted RBP5.4□□□□□ -1.54
VPS35-201ENST00000299138 WFDC1Q9HC57 220 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 PROCRQ9UNN8 238 aa5.4□□□□□ -1.54
VPS35-201ENST00000299138 AMMECR1Q9Y4X0 333 aaPredicted RBP5.4□□□□□ -1.54
VPS35-201ENST00000299138 TRBV20-1A0A075B6N2 111 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms