RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 WIPF3A6NGB9 483 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 TUSC2O75896 110 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 IGLV3-27P01718 113 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 PRSS1P07477 247 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 KLF5Q13887 457 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 CHAC1Q9BUX1 264 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 C6orf106Q9H6K1 298 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 BRWD1Q9NSI6 2320 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 FAM90A26D6RGX4 464 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 HOXA3O43365 443 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 WIPF1O43516 503 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 MPDU1O75352 247 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 DXOO77932 396 aaKnown RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 UCNP55089 124 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 PMVKQ15126 192 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 RSPO2Q6UXX9 243 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 OSR2Q8N2R0 312 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 PRADC1Q9BSG0 188 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 FAM60AQ9NP50 221 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 PRTFDC1Q9NRG1 225 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 V9GYY9 64 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 MYO7AQ13402 2215 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 F5P12259 2224 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 ZSWIM8A7E2V4 1837 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 SH2D7A6NKC9 451 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 IGLL5B9A064 214 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 GCHFRP30047 84 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 TMEM211Q6ICI0 200 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 GAGE2AQ6NT46 116 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF474Q6S9Z5 364 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 SPACA3Q8IXA5 215 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 SPEM1Q8N4L4 309 aa4.8□□□□□ -1.64
SCN1A-216ENST00000637968 SCARF2Q96GP6 870 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 THAP10Q9P2Z0 257 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-216ENST00000637968 IGKV1D-8A0A087WSZ0 117 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 IGHV1-24A0A0C4DH33 117 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 A0A0J9YW62 118 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 K7ERJ3 54 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 NPFFO15130 113 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 NKX2-2O95096 273 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 C1orf61Q13536 156 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 VWC2Q2TAL6 325 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 H2BFWTQ7Z2G1 175 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 ATP5L2Q7Z4Y8 100 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 C3orf56Q8N813 242 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 NT5CQ8TCD5 201 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 VWCEQ96DN2 955 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 BMFQ96LC9 184 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 V9GYV3 84 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 KNL1Q8NG31 2342 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 TRAV2A0A0B4J234 112 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 A0A1W2PPI3 338 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 FOXI3A8MTJ6 420 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-216ENST00000637968 GGTLC3B5MD39 225 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 RHODO00212 210 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 APOHP02749 345 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-216ENST00000637968 CD70P32970 193 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 KIR2DS2P43631 304 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 SRSF2Q01130 221 aaKnown RBP4.79□□□□□ -1.64
SCN1A-216ENST00000637968 PPP1R32Q7Z5V6 425 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 GTSF1Q8WW33 167 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 TM2D2Q9BX73 214 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 EDA2RQ9HAV5 297 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 FZR1Q9UM11 496 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 PLXNA3P51805 1871 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 NCBP2LA6PVI3 153 aaKnown RBP4.79□□□□□ -1.64
SCN1A-216ENST00000637968 F8WDY8 70 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 PLGLB1Q02325 96 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 DPTQ07507 201 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 SRSF9Q13242 221 aaKnown RBP eCLIP4.79□□□□□ -1.64
SCN1A-216ENST00000637968 RBPMS2Q6ZRY4 209 aaKnown RBP4.79□□□□□ -1.64
SCN1A-216ENST00000637968 LINC01465Q8N7H1 131 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 OR9G1Q8NH87 305 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 SPTSSAQ969W0 71 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 C8orf44Q96CB5 159 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 ABHD17AQ96GS6 310 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 ZNF355PQ9NSJ1 428 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 TRPM7Q96QT4 1865 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 HRKO00198 91 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 CD27P26842 260 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 HSPE1P61604 102 aaKnown RBP4.79□□□□□ -1.64
SCN1A-216ENST00000637968 CACNG7P62955 275 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 HES3Q5TGS1 186 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 ACP7Q6ZNF0 438 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 ASCL5Q7RTU5 278 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 TEN1Q86WV5 123 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 C1orf210Q8IVY1 113 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 Q8TCH9 128 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 LRRC29Q8WV35 223 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 HCSTQ9UBK5 93 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 EPDR1Q9UM22 224 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 TICRRQ7Z2Z1 1910 aa4.79□□□□□ -1.64
SCN1A-216ENST00000637968 CEP290O15078 2479 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 A0A087WX48 190 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 A0A1W2PQF6 199 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 ORM2P19652 201 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 PEBP1P30086 187 aaKnown RBP4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TFF3Q07654 80 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 TEX45Q8NA69 505 aa4.78□□□□□ -1.64
SCN1A-216ENST00000637968 NUP35Q8NFH5 326 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms