RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GGTLC1Q9BX51 225 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 PLEKHA3Q9HB20 300 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 SEPSECSQ9HD40 501 aaKnown RBP8.64□□□□□ -1.03
CUX1-221ENST00000622516 UPK2O00526 184 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 TNFRSF13BO14836 293 aaPredicted RBP8.64□□□□□ -1.03
CUX1-221ENST00000622516 IFNA1P01562 189 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 FOLR2P14207 255 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 IGFBP2P18065 325 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 ADTRPQ96IZ2 230 aa8.64□□□□□ -1.03
CUX1-221ENST00000622516 SPG11Q96JI7 2443 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 CFAP46Q8IYW2 2715 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 H0YJW9 148 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 ENSAO43768 121 aaKnown RBP8.63□□□□□ -1.03
CUX1-221ENST00000622516 KBTBD11O94819 623 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 C1QTNF9P0C862 333 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 PAX6P26367 422 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 ATP5G3P48201 142 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 MEF2CQ06413 473 aaPredicted RBP8.63□□□□□ -1.03
CUX1-221ENST00000622516 ZNF833PQ6ZTB9 187 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 PARLQ9H300 379 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 METTL1Q9UBP6 276 aaKnown RBP8.63□□□□□ -1.03
CUX1-221ENST00000622516 ARL14EPLP0DKL9 152 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 AGAP20933 346 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 NPPCP23582 126 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 ADORA2A-AS1P86434 159 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 YPEL4Q96NS1 127 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 DERL1Q9BUN8 251 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 SDF2L1Q9HCN8 221 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 NPVFQ9HCQ7 196 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 TPSG1Q9NRR2 321 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 CRYBG3Q68DQ2 2970 aa8.63□□□□□ -1.03
CUX1-221ENST00000622516 CSMD2Q7Z408 3487 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 PGPEP1LA6NFU8 196 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 B9A039 149 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 C11orf94C9JXX5 98 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 FOXH1O75593 365 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 STPG3Q8N7X2 389 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 FLYWCH2Q96CP2 140 aaKnown RBP8.62□□□□□ -1.03
CUX1-221ENST00000622516 REG1AP05451 166 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 IL6RP08887 468 aaPredicted RBP8.62□□□□□ -1.03
CUX1-221ENST00000622516 KLRB1Q12918 225 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 LBHQ53QV2 105 aaPredicted RBP8.62□□□□□ -1.03
CUX1-221ENST00000622516 TEPPQ6URK8 271 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 TGIF2LXQ8IUE1 241 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 C11orf42Q8N5U0 333 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 P2RX4Q99571 388 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 PRNDQ9UKY0 176 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 ZFYVE26Q68DK2 2539 aa8.62□□□□□ -1.03
CUX1-221ENST00000622516 FLNCQ14315 2725 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 IGKV1OR2-108A0A075B7D4 117 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 APOA2P02652 100 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 IGHV1-8P0DP01 117 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 FAM216AQ8WUB2 273 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 C2orf88Q9BSF0 95 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 COMMD5Q9GZQ3 224 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 SLC25A17O43808 307 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 HNF1AP20823 631 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 COX7A1P24310 79 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 OPRK1P41145 380 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 PRCDQ00LT1 54 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 C4orf17Q53FE4 359 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 C19orf35Q6ZS72 473 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 OR5AN1Q8NGI8 311 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 NABP2Q9BQ15 211 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 LSM4Q9Y4Z0 139 aaKnown RBP8.61□□□□□ -1.03
CUX1-221ENST00000622516 UTP20O75691 2785 aaKnown RBP8.61□□□□□ -1.03
CUX1-221ENST00000622516 CNTFRP26992 372 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 DLX6P56179 175 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 LGALS4P56470 323 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 TMEM241Q24JQ0 296 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 TMEM155Q4W5P6 130 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 OR10A7Q8NGE5 316 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 OR9G1Q8NH87 305 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 OR2T6Q8NHC8 308 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 GGACTQ9BVM4 153 aa8.61□□□□□ -1.03
CUX1-221ENST00000622516 NDUFB4O95168 129 aa8.6□□□□□ -1.03
CUX1-221ENST00000622516 TRGC2P03986 189 aa8.6□□□□□ -1.03
CUX1-221ENST00000622516 SNRPCP09234 159 aaKnown RBP8.6□□□□□ -1.03
CUX1-221ENST00000622516 RPL23P62829 140 aaKnown RBP8.6□□□□□ -1.03
CUX1-221ENST00000622516 RPL8P62917 257 aaKnown RBP8.6□□□□□ -1.03
CUX1-221ENST00000622516 EFNB3Q15768 340 aa8.6□□□□□ -1.03
CUX1-221ENST00000622516 POU2AF1Q16633 256 aa8.6□□□□□ -1.03
CUX1-221ENST00000622516 SPNS3Q6ZMD2 512 aa8.6□□□□□ -1.03
CUX1-221ENST00000622516 A0A087WWC5 75 aa8.6□□□□□ -1.03
CUX1-221ENST00000622516 ZNF672Q499Z4 452 aaPredicted RBP8.6□□□□□ -1.03
CUX1-221ENST00000622516 REC114Q7Z4M0 266 aa8.6□□□□□ -1.03
CUX1-221ENST00000622516 ACY3Q96HD9 319 aa8.6□□□□□ -1.03
CUX1-221ENST00000622516 ZNF430Q9H8G1 570 aaPredicted RBP8.6□□□□□ -1.03
CUX1-221ENST00000622516 ACACBO00763 2458 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 MPDU1O75352 247 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 BMI1P35226 326 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 GNB1P62873 340 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 SSBP2P81877 361 aaPredicted RBP8.59□□□□□ -1.03
CUX1-221ENST00000622516 GAMTQ14353 236 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 FAM78BQ5VT40 261 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 C16orf82Q7Z2V1 217 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 ST6GALNAC3Q8NDV1 305 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 OR4P4Q8NGL7 312 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 OR4C13Q8NGP0 309 aa8.59□□□□□ -1.03
CUX1-221ENST00000622516 OSR1Q8TAX0 266 aaPredicted RBP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms