RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 UXS1Q8NBZ7 420 aa15.37■□□□□ 0.05
UPF3A-211ENST00000618700 OR1S1Q8NH92 325 aa15.37■□□□□ 0.05
UPF3A-211ENST00000618700 KLK15Q9H2R5 256 aa15.37■□□□□ 0.05
UPF3A-211ENST00000618700 PLEKHA3Q9HB20 300 aa15.37■□□□□ 0.05
UPF3A-211ENST00000618700 KLK9Q9UKQ9 250 aa15.37■□□□□ 0.05
UPF3A-211ENST00000618700 RPLP1P05386 114 aaKnown RBP15.36■□□□□ 0.05
UPF3A-211ENST00000618700 OR13C7P0DN81 318 aa15.36■□□□□ 0.05
UPF3A-211ENST00000618700 C2orf68Q2NKX9 166 aa15.36■□□□□ 0.05
UPF3A-211ENST00000618700 HIST2H2BDQ6DRA6 164 aa15.36■□□□□ 0.05
UPF3A-211ENST00000618700 LCNL1Q6ZST4 164 aa15.36■□□□□ 0.05
UPF3A-211ENST00000618700 MRPL41Q8IXM3 137 aaKnown RBP15.36■□□□□ 0.05
UPF3A-211ENST00000618700 OR4D5Q8NGN0 318 aa15.36■□□□□ 0.05
UPF3A-211ENST00000618700 OR10C1Q96KK4 312 aa15.36■□□□□ 0.05
UPF3A-211ENST00000618700 CITED2Q99967 270 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-211ENST00000618700 ALG5Q9Y673 324 aa15.36■□□□□ 0.05
UPF3A-211ENST00000618700 FAM90A26D6RGX4 464 aa15.35■□□□□ 0.05
UPF3A-211ENST00000618700 NXPH3O95157 252 aa15.35■□□□□ 0.05
UPF3A-211ENST00000618700 PF4V1P10720 104 aa15.35■□□□□ 0.05
UPF3A-211ENST00000618700 HOXA1P49639 335 aaPredicted RBP15.35■□□□□ 0.05
UPF3A-211ENST00000618700 RAB9AP51151 201 aa15.35■□□□□ 0.05
UPF3A-211ENST00000618700 KIAA0141Q14154 515 aaPredicted RBP15.35■□□□□ 0.05
UPF3A-211ENST00000618700 IAH1Q2TAA2 248 aaPredicted RBP15.35■□□□□ 0.05
UPF3A-211ENST00000618700 SHISA2Q6UWI4 295 aa15.35■□□□□ 0.05
UPF3A-211ENST00000618700 OR2C3Q8N628 320 aa15.35■□□□□ 0.05
UPF3A-211ENST00000618700 SLA2Q9H6Q3 261 aa15.35■□□□□ 0.05
UPF3A-211ENST00000618700 TRBV9A0A0B4J1U6 114 aa15.34■□□□□ 0.05
UPF3A-211ENST00000618700 ADARB2-AS1A8MUL3 147 aa15.34■□□□□ 0.05
UPF3A-211ENST00000618700 TMEM65Q6PI78 240 aa15.34■□□□□ 0.05
UPF3A-211ENST00000618700 ZBTB8BQ8NAP8 495 aaPredicted RBP15.34■□□□□ 0.05
UPF3A-211ENST00000618700 ZNF114Q8NC26 417 aa15.34■□□□□ 0.05
UPF3A-211ENST00000618700 FANCD2OSQ96PS1 177 aa15.34■□□□□ 0.05
UPF3A-211ENST00000618700 DMRT1Q9Y5R6 373 aa15.34■□□□□ 0.05
UPF3A-211ENST00000618700 F11RQ9Y624 299 aaKnown RBP15.34■□□□□ 0.05
UPF3A-211ENST00000618700 IGLV11-55A0A075B6I3 123 aa15.33■□□□□ 0.04
UPF3A-211ENST00000618700 TCRBV4S1A1TA0A5B7 111 aa15.33■□□□□ 0.04
UPF3A-211ENST00000618700 PRH1P02810 166 aa15.33■□□□□ 0.04
UPF3A-211ENST00000618700 RPL23AP62750 156 aaKnown RBP15.33■□□□□ 0.04
UPF3A-211ENST00000618700 NDUFA11Q86Y39 141 aa15.33■□□□□ 0.04
UPF3A-211ENST00000618700 MS4A10Q96PG2 267 aa15.33■□□□□ 0.04
UPF3A-211ENST00000618700 ZNF355PQ9NSJ1 428 aa15.33■□□□□ 0.04
UPF3A-211ENST00000618700 ZFP57Q9NU63 452 aa15.33■□□□□ 0.04
UPF3A-211ENST00000618700 TSSC4Q9Y5U2 329 aaPredicted RBP15.33■□□□□ 0.04
UPF3A-211ENST00000618700 CEBPZOSA8MTT3 80 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 TRGV3P03979 118 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 MFAP2P55001 183 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 TPPP2P59282 170 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 ERHP84090 104 aaKnown RBP15.32■□□□□ 0.04
UPF3A-211ENST00000618700 BSXQ3C1V8 233 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 C11orf87Q6NUJ2 197 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 ZNF491Q8N8L2 437 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 OR1P1Q8NH06 330 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 P2RX4Q99571 388 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 RBKSQ9H477 322 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 ENY2Q9NPA8 101 aa15.32■□□□□ 0.04
UPF3A-211ENST00000618700 C13orf42A0A1B0GVH6 325 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 C5orf51A6NDU8 294 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 FAM25EA8MYX2 175 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 GOSR2O14653 212 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 SSNA1O43805 119 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 DEFA4P12838 97 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 CDX1P47902 265 aaPredicted RBP15.31■□□□□ 0.04
UPF3A-211ENST00000618700 DEFA5Q01523 94 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 ID3Q02535 119 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 KHDC1LQ5JSQ8 128 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 GSG1LQ6UXU4 331 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 DTD1Q8TEA8 209 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 UBE2E2Q96LR5 201 aa15.31■□□□□ 0.04
UPF3A-211ENST00000618700 FAM223BA6NKX1 122 aa15.3■□□□□ 0.04
UPF3A-211ENST00000618700 MED6O75586 246 aa15.3■□□□□ 0.04
UPF3A-211ENST00000618700 RNASE2P10153 161 aaKnown RBP15.3■□□□□ 0.04
UPF3A-211ENST00000618700 HIST1H1BP16401 226 aaKnown RBP15.3■□□□□ 0.04
UPF3A-211ENST00000618700 NKX2-1P43699 371 aaPredicted RBP15.3■□□□□ 0.04
UPF3A-211ENST00000618700 RHOGP84095 191 aa15.3■□□□□ 0.04
UPF3A-211ENST00000618700 PVRIGQ6DKI7 326 aa15.3■□□□□ 0.04
UPF3A-211ENST00000618700 FAM223AQ8IWN6 122 aa15.3■□□□□ 0.04
UPF3A-211ENST00000618700 NECAP1Q8NC96 275 aa15.3■□□□□ 0.04
UPF3A-211ENST00000618700 OR1L6Q8NGR2 347 aa15.3■□□□□ 0.04
UPF3A-211ENST00000618700 C2orf50Q96LR7 162 aa15.3■□□□□ 0.04
UPF3A-211ENST00000618700 A6NJY4 79 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 OR2J3O76001 311 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 IL15RAQ13261 267 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 C18orf65Q6ZTR6 163 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 C4orf3Q8WVX3 66 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 USMG5Q96IX5 58 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 MAGT1Q9H0U3 335 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 GNB4Q9HAV0 340 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 HEYLQ9NQ87 328 aaPredicted RBP15.29■□□□□ 0.04
UPF3A-211ENST00000618700 GSKIPQ9P0R6 139 aa15.29■□□□□ 0.04
UPF3A-211ENST00000618700 A0A0G2JLM5 398 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 A0A1W2PRX2 142 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 CYB5BO43169 146 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 SYNGR2O43760 224 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 SIX6O95475 246 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 MBPP02686 304 aaPredicted RBP15.28■□□□□ 0.04
UPF3A-211ENST00000618700 SNCAP37840 140 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 HTR2BP41595 481 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 H2BFSP57053 126 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 POLR2GP62487 172 aaKnown RBP eCLIP15.28■□□□□ 0.04
UPF3A-211ENST00000618700 KLHL30-AS1Q8NEE0 82 aa15.28■□□□□ 0.04
UPF3A-211ENST00000618700 HIPK2Q9H2X6 1198 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms