RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 KLF5Q13887 457 aaPredicted RBP14.87□□□□□ -0.03
UPF1-212ENST00000601689 KLK9Q2XQG4 91 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 SLC35G3Q8N808 338 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 OR9G4Q8NGQ1 327 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 TRIM63Q969Q1 353 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 SRRQ9GZT4 340 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 KLK9Q9UKQ9 250 aa14.87□□□□□ -0.03
UPF1-212ENST00000601689 F11RQ9Y624 299 aaKnown RBP14.87□□□□□ -0.03
UPF1-212ENST00000601689 MEGF8Q7Z7M0 2845 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 NAP1L6A6NFF2 107 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 ARL3P36405 182 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 SNCAP37840 140 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 SUB1P53999 127 aaKnown RBP eCLIP14.86□□□□□ -0.03
UPF1-212ENST00000601689 KRTAP10-11P60412 298 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 WT1-ASQ06250 92 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 FAM106AQ4KMX7 169 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 CLEC19AQ6UXS0 136 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 VN1R17PQ8TDU5 208 aa14.86□□□□□ -0.03
UPF1-212ENST00000601689 GAR1Q9NY12 217 aaKnown RBP14.86□□□□□ -0.03
UPF1-212ENST00000601689 ZNF256Q9Y2P7 627 aaPredicted RBP14.86□□□□□ -0.03
UPF1-212ENST00000601689 TMEM268Q5VZI3 342 aa14.85□□□□□ -0.03
UPF1-212ENST00000601689 TMED4Q7Z7H5 227 aa14.85□□□□□ -0.03
UPF1-212ENST00000601689 OR1P1Q8NH06 330 aa14.85□□□□□ -0.03
UPF1-212ENST00000601689 GLYATL2Q8WU03 294 aa14.85□□□□□ -0.03
UPF1-212ENST00000601689 IL22RA2Q969J5 263 aa14.85□□□□□ -0.03
UPF1-212ENST00000601689 GALNT14Q96FL9 552 aa14.85□□□□□ -0.03
UPF1-212ENST00000601689 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.85□□□□□ -0.03
UPF1-212ENST00000601689 SORL1Q92673 2214 aa14.85□□□□□ -0.03
UPF1-212ENST00000601689 IGKV1-5P01602 117 aa14.84□□□□□ -0.03
UPF1-212ENST00000601689 TRBV12-3P01733 135 aa14.84□□□□□ -0.03
UPF1-212ENST00000601689 IGHV3-23P01764 117 aa14.84□□□□□ -0.03
UPF1-212ENST00000601689 C19orf35Q6ZS72 473 aa14.84□□□□□ -0.03
UPF1-212ENST00000601689 BMPR1BO00238 502 aa14.83□□□□□ -0.04
UPF1-212ENST00000601689 CLEC3BP05452 202 aa14.83□□□□□ -0.04
UPF1-212ENST00000601689 HOXA1P49639 335 aaPredicted RBP14.83□□□□□ -0.04
UPF1-212ENST00000601689 RBMS2Q15434 407 aaKnown RBP14.83□□□□□ -0.04
UPF1-212ENST00000601689 TMEM128Q5BJH2 165 aa14.83□□□□□ -0.04
UPF1-212ENST00000601689 PLET1Q6UQ28 207 aa14.83□□□□□ -0.04
UPF1-212ENST00000601689 SELENOHQ8IZQ5 122 aaKnown RBP14.83□□□□□ -0.04
UPF1-212ENST00000601689 LGI3Q8N145 548 aa14.83□□□□□ -0.04
UPF1-212ENST00000601689 OR2C3Q8N628 320 aa14.83□□□□□ -0.04
UPF1-212ENST00000601689 ATP6V0BQ99437 205 aa14.83□□□□□ -0.04
UPF1-212ENST00000601689 DBX1A6NMT0 343 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 PPP5D1E7EU14 171 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 CORTO00230 105 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 ST8SIA3O43173 380 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 GPHB5Q86YW7 130 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 C7orf50Q9BRJ6 194 aaKnown RBP14.82□□□□□ -0.04
UPF1-212ENST00000601689 PALMDQ9NP74 551 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 C21orf62Q9NYP8 219 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 S4R3C0 116 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 TMEM56-RWDD3S4R434 201 aa14.82□□□□□ -0.04
UPF1-212ENST00000601689 A0A0B4J293 547 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 WI2-2373I1.2A0A1W2PRP0 233 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 MFSD2BA6NFX1 497 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 K7EIL1 84 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 GPR183P32249 361 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 SPCS3P61009 180 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 IZUMO4Q1ZYL8 232 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 SPSB3Q6PJ21 355 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 LINC00299Q6ZSB3 139 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 CENPSQ8N2Z9 138 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 ZNF114Q8NC26 417 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 DYNLRB2Q8TF09 96 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 MISP3Q96FF7 219 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 SIGLEC8Q9NYZ4 499 aa14.81□□□□□ -0.04
UPF1-212ENST00000601689 A0A0B4J2A0 478 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 ZNF320A2RRD8 509 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 LGALS9O00182 355 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 OR2C1O95371 312 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 P0C879 139 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 VAMP1P23763 118 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 TMEM187Q14656 261 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 CNPY1Q3B7I2 92 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 Q56UQ5 140 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 LCN12Q6JVE5 192 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 OR52E5Q8NH55 327 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 ZNF502Q8TBZ5 544 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 BSCL2Q96G97 398 aaPredicted RBP14.8□□□□□ -0.04
UPF1-212ENST00000601689 CCDC140Q96MF4 163 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 SHPKQ9UHJ6 478 aa14.8□□□□□ -0.04
UPF1-212ENST00000601689 DUXBA0A1W2PPF3 345 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 INS-IGF2F8WCM5 200 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 SCGB2A1O75556 95 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 SULT1A3P0DMM9 295 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 SULT1A4P0DMN0 295 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 GP9P14770 177 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 MFAP4P55083 255 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 BAK1Q16611 211 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 NOXA1Q86UR1 476 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 UBAC2Q8NBM4 344 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 SCARB1Q8WTV0 552 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 S100ZQ8WXG8 99 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 TMEM230Q96A57 120 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 PRR25Q96S07 402 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 HIPK2Q9H2X6 1198 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 CACNG5Q9UF02 275 aa14.79□□□□□ -0.04
UPF1-212ENST00000601689 LINC00854A0A1B0GVQ3 168 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 CEBPZOSA8MTT3 80 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 NUPL2O15504 423 aaKnown RBP14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms