RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 LDLRAD2Q5SZI1 272 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 TMEM14EPQ6UXP3 125 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 CENPVQ7Z7K6 275 aaPredicted RBP12.26□□□□□ -0.45
VRK3-218ENST00000600031 TGIF2LXQ8IUE1 241 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 OR5AN1Q8NGI8 311 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 CTDSP1Q9GZU7 261 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 SDF2L1Q9HCN8 221 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 URGCP-MRPS24S4R325 110 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 NAV2Q8IVL1 2488 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 CYB5BO43169 146 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 S100A2P29034 98 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 SSX9Q7RTT3 188 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 H2BFWTQ7Z2G1 175 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 PCGF1Q9BSM1 259 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 HSPB7Q9UBY9 170 aa12.26□□□□□ -0.45
VRK3-218ENST00000600031 MAP1LC3B2A6NCE7 125 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 SEC14L6B5MCN3 397 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 LY6LH3BQJ8 138 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 TOX4O94842 621 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 YIF1AO95070 293 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 SLC25A16P16260 332 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 HOXB4P17483 251 aaPredicted RBP12.25□□□□□ -0.45
VRK3-218ENST00000600031 TNFRSF9Q07011 255 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 RTL8BQ17RB0 113 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 TBX15Q96SF7 602 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 GGACTQ9BVM4 153 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 MAP1LC3BQ9GZQ8 125 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 RBKSQ9H477 322 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 GAR1Q9NY12 217 aaKnown RBP12.25□□□□□ -0.45
VRK3-218ENST00000600031 ELOA3CA0A087WX78 387 aaPredicted RBP12.25□□□□□ -0.45
VRK3-218ENST00000600031 A0A1W2PRD5 423 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 A0A1W2PRF3 423 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 A0A1W2PRM7 423 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 ODF3BA8MYP8 253 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 NDUFS6O75380 124 aaKnown RBP12.25□□□□□ -0.45
VRK3-218ENST00000600031 USF1P22415 310 aaPredicted RBP12.25□□□□□ -0.45
VRK3-218ENST00000600031 FAM210BQ96KR6 192 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 SLC39A9Q9NUM3 307 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 AMMECR1Q9Y4X0 333 aaPredicted RBP12.25□□□□□ -0.45
VRK3-218ENST00000600031 INSIG2Q9Y5U4 225 aa12.25□□□□□ -0.45
VRK3-218ENST00000600031 CEBPZOSA8MTT3 80 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 APOA2P02652 100 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 OPN1MWP04001 364 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 OR9G9P0C7N8 305 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 OPN1MW2P0DN77 364 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 OPN1MW3P0DN78 364 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 FGF8P55075 233 aaPredicted RBP12.24□□□□□ -0.45
VRK3-218ENST00000600031 SSX7Q7RTT5 188 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 LRRC75A-AS1Q8N1F1 130 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 CSMD1Q96PZ7 3565 aa12.24□□□□□ -0.45
VRK3-218ENST00000600031 A0A096LNT2 108 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 UBE2L5PA0A1B0GUS4 154 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 SRRM4A7MD48 611 aaKnown RBP12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BKO60814 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 MBP02144 154 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 TRGC2P03986 189 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BJP06899 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BOP23527 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HTR1DP28221 377 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BBP33778 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BDP58876 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 ERVK-16P61578 105 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BCP62807 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST2H2BEQ16778 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.23□□□□□ -0.45
VRK3-218ENST00000600031 LHFPL4Q7Z7J7 247 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BHQ93079 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 LHX4Q969G2 390 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 RHOVQ96L33 236 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BNQ99877 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 HIST1H2BMQ99879 126 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.23□□□□□ -0.45
VRK3-218ENST00000600031 TRBV24-1A0A075B6N3 115 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 IGHV3-72A0A0B4J1Y9 119 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 PAX8Q06710 450 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 RPEQ96AT9 228 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 MBD6Q96DN6 1003 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 TMEM147Q9BVK8 224 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 TMEM140Q9NV12 185 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 DPM3Q9P2X0 92 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 NAT8Q9UHE5 227 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 DMRT1Q9Y5R6 373 aa12.23□□□□□ -0.45
VRK3-218ENST00000600031 TRAV3A0A0B4J244 114 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 IGHV1-3A0A0C4DH29 117 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 IFITM10A6NMD0 228 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 ELLP55199 621 aaPredicted RBP12.22□□□□□ -0.45
VRK3-218ENST00000600031 TPTE2P1Q5T6R2 138 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 OR8G2PQ6IF36 304 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 CIB3Q96Q77 187 aaPredicted RBP12.22□□□□□ -0.45
VRK3-218ENST00000600031 WASHC3Q9Y3C0 194 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 PPP1R2P9O14990 202 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 HRASP01112 189 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 POU2AF1Q16633 256 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 Q5PR19 223 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 OR4A47Q6IF82 309 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 MOB3BQ86TA1 216 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 PDPNQ86YL7 162 aa12.22□□□□□ -0.45
VRK3-218ENST00000600031 RPP25LQ8N5L8 163 aaKnown RBP12.22□□□□□ -0.45
VRK3-218ENST00000600031 FLYWCH2Q96CP2 140 aaKnown RBP12.22□□□□□ -0.45
VRK3-218ENST00000600031 HILPDAQ9Y5L2 63 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms