RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 AKAP14Q86UN6 197 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 TCTE3Q8IZS6 198 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 OR11H4Q8NGC9 324 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 OR2T35Q8NGX2 323 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 SRSF12Q8WXF0 261 aaKnown RBP7.41□□□□□ -1.22
TRIM28-208ENST00000597172 FAM103A1Q9BTL3 118 aaKnown RBP7.41□□□□□ -1.22
TRIM28-208ENST00000597172 OR5AC2Q9NZP5 309 aa7.41□□□□□ -1.22
TRIM28-208ENST00000597172 LSM5Q9Y4Y9 91 aaKnown RBP7.41□□□□□ -1.22
TRIM28-208ENST00000597172 IGLC7A0M8Q6 106 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 FAM181BA6NEQ2 426 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 CEBPZOSA8MTT3 80 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 INS-IGF2F8WCM5 200 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 WRBO00258 174 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 MED6O75586 246 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 DEDDO75618 318 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 ACTL6BO94805 426 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 IAPPP10997 89 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 LYL1P12980 280 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 S100A10P60903 97 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 WT1-ASQ06250 92 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 C9orf152Q5JTZ5 239 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 PRSS54Q6PEW0 395 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 GRPEL2Q8TAA5 225 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 DTD1Q8TEA8 209 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 ARPC1AQ92747 370 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 SMIM8Q96KF7 97 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 LYSTQ99698 3801 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 HINT2Q9BX68 163 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 ZNF702PQ9H963 129 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 GAR1Q9NY12 217 aaKnown RBP7.4□□□□□ -1.22
TRIM28-208ENST00000597172 CACFD1Q9UGQ2 172 aa7.4□□□□□ -1.22
TRIM28-208ENST00000597172 TNCP24821 2201 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 TET2Q6N021 2002 aaPredicted RBP7.39□□□□□ -1.23
TRIM28-208ENST00000597172 ATP6V0E1O15342 81 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 SSSCA1O60232 199 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 PFDN1O60925 122 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 APELAP0DMC3 54 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 OR13C7P0DN81 318 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 SLC25A4P12235 298 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 AREGP15514 252 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 CRIP2P52943 208 aaPredicted RBP7.39□□□□□ -1.23
TRIM28-208ENST00000597172 C19orf54Q5BKX5 351 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 Q6ZSV7 163 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 Q8N2B8 174 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 OR2C3Q8N628 320 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 LFNGQ8NES3 379 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 TMEM170AQ8WVE7 144 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 RAB40CQ96S21 281 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 ZFP57Q9NU63 452 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 MBD2Q9UBB5 411 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 LINC00527Q9UJ94 153 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 WSB1Q9Y6I7 421 aa7.39□□□□□ -1.23
TRIM28-208ENST00000597172 LCE6AA0A183 80 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 A0A1W2PN81 502 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 FAM24AA6NFZ4 105 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 G3V318 75 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 TSPAN9O75954 239 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 C1QBP02746 253 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 RLN2P04090 185 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 IGF1P05019 195 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 REG1AP05451 166 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 CRYBA1P05813 215 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 CRYGCP07315 174 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 CHRNA7P36544 502 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 FGL1Q08830 312 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 BSXQ3C1V8 233 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 TMEM95Q3KNT9 176 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 AKIRIN2Q53H80 203 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 TMEM65Q6PI78 240 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 C19orf35Q6ZS72 473 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 SLC35E3Q7Z769 313 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 TTC9CQ8N5M4 171 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 THAP6Q8TBB0 222 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 NOL4LQ96MY1 436 aaPredicted RBP7.38□□□□□ -1.23
TRIM28-208ENST00000597172 OR4C12Q96R67 309 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 SRSF8Q9BRL6 282 aaKnown RBP7.38□□□□□ -1.23
TRIM28-208ENST00000597172 PRSS22Q9GZN4 317 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 NPFFR1Q9GZQ6 430 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 PLEKHA3Q9HB20 300 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 HEYLQ9NQ87 328 aaPredicted RBP7.38□□□□□ -1.23
TRIM28-208ENST00000597172 PARP11Q9NR21 331 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 PSENENQ9NZ42 101 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 DMRT1Q9Y5R6 373 aa7.38□□□□□ -1.23
TRIM28-208ENST00000597172 DNAH7Q8WXX0 4024 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 C15orf62A8K5M9 175 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 PMS2P5A8MQ11 134 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 E5RGE8 158 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 NDUFA7O95182 113 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 RNASE2P10153 161 aaKnown RBP7.37□□□□□ -1.23
TRIM28-208ENST00000597172 CTRB1P17538 263 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 P2RY1P47900 373 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 HOXA1P49639 335 aaPredicted RBP7.37□□□□□ -1.23
TRIM28-208ENST00000597172 MFAP2P55001 183 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 TAS2R30P59541 319 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 ERHP84090 104 aaKnown RBP7.37□□□□□ -1.23
TRIM28-208ENST00000597172 OXLD1Q5BKU9 147 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 SPANXN5Q5MJ07 72 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 PVRIGQ6DKI7 326 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 CTRB2Q6GPI1 263 aa7.37□□□□□ -1.23
TRIM28-208ENST00000597172 UNQ5815/PRO19632Q6UWF5 114 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms