RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TRAV14DV4A0A0A6YYC5 116 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 PSMB11A5LHX3 300 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 H0YIZ8 118 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 WRBO00258 174 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 SSSCA1O60232 199 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 LCNL1Q6ZST4 164 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 TCTE3Q8IZS6 198 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 DTD1Q8TEA8 209 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 CITED2Q99967 270 aaPredicted RBP11.74□□□□□ -0.53
TRIM28-207ENST00000597136 RNF126Q9BV68 326 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 PLEKHA3Q9HB20 300 aa11.74□□□□□ -0.53
TRIM28-207ENST00000597136 IGLC7A0M8Q6 106 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 G3V3Q6 166 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 SMLR1H3BR10 107 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 FBXO24O75426 580 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 DEDDO75618 318 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 TMEM50AO95807 157 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 RLN2P04090 185 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 IGF1P05019 195 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 HOXA1P49639 335 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-207ENST00000597136 FGL1Q08830 312 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 C11orf87Q6NUJ2 197 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 SGMS2Q8NHU3 365 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 ABHD5Q8WTS1 349 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 RAB40CQ96S21 281 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 C11orf1Q9H5F2 150 aa11.73□□□□□ -0.53
TRIM28-207ENST00000597136 A0A1W2PN81 502 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 INS-IGF2F8WCM5 200 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 PFDN1O60925 122 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 PET100P0DJ07 73 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 APELAP0DMC3 54 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 IAPPP10997 89 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 CHRNA7P36544 502 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 PAX9P55771 341 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 CFHR3Q02985 330 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 WT1-ASQ06250 92 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 CIB3Q96Q77 187 aaPredicted RBP11.72□□□□□ -0.53
TRIM28-207ENST00000597136 SRSF8Q9BRL6 282 aaKnown RBP11.72□□□□□ -0.53
TRIM28-207ENST00000597136 ENY2Q9NPA8 101 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 HEYLQ9NQ87 328 aaPredicted RBP11.72□□□□□ -0.53
TRIM28-207ENST00000597136 OR5AC2Q9NZP5 309 aa11.72□□□□□ -0.53
TRIM28-207ENST00000597136 ADARB2-AS1A8MUL3 147 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 OR13C7P0DN81 318 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 AREGP15514 252 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 PPIFP30405 207 aaKnown RBP11.71□□□□□ -0.53
TRIM28-207ENST00000597136 CRIP2P52943 208 aaPredicted RBP11.71□□□□□ -0.53
TRIM28-207ENST00000597136 ASPHD1Q5U4P2 390 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 PRSS54Q6PEW0 395 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 HSD17B13Q7Z5P4 300 aaPredicted RBP11.71□□□□□ -0.53
TRIM28-207ENST00000597136 LFNGQ8NES3 379 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 SMIM8Q96KF7 97 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 HIPK2Q9H2X6 1198 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 MBD2Q9UBB5 411 aa11.71□□□□□ -0.53
TRIM28-207ENST00000597136 TRAV41A0A0B4J266 112 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 A0A1W2PRX2 142 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 LY86O95711 162 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 LYL1P12980 280 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 PVALBP20472 110 aaPredicted RBP11.71□□□□□ -0.54
TRIM28-207ENST00000597136 TAS2R30P59541 319 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 ERHP84090 104 aaKnown RBP11.71□□□□□ -0.54
TRIM28-207ENST00000597136 ECSCRQ19T08 205 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 NSUN5P1Q3KNT7 163 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 C19orf54Q5BKX5 351 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 MRPL41Q8IXM3 137 aaKnown RBP11.71□□□□□ -0.54
TRIM28-207ENST00000597136 OR2C3Q8N628 320 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 THAP6Q8TBB0 222 aa11.71□□□□□ -0.54
TRIM28-207ENST00000597136 NOTCH1P46531 2555 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 E5RGE8 158 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 L7N2F9 121 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 SOX15O60248 233 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 REG1AP05451 166 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 SLC25A4P12235 298 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 VAMP2P63027 116 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 TMEM267Q0VDI3 215 aaPredicted RBP11.7□□□□□ -0.54
TRIM28-207ENST00000597136 AKIRIN2Q53H80 203 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 C18orf65Q6ZTR6 163 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 KLK15Q9H2R5 256 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 PSENENQ9NZ42 101 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 U3KQ87 197 aa11.7□□□□□ -0.54
TRIM28-207ENST00000597136 TCRBV4S1A1TA0A5B7 111 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 RPLP1P05386 114 aaKnown RBP11.69□□□□□ -0.54
TRIM28-207ENST00000597136 SNCAP37840 140 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 RPL23AP62750 156 aaKnown RBP11.69□□□□□ -0.54
TRIM28-207ENST00000597136 SLC35B1P78383 322 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 BSXQ3C1V8 233 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 TEX38Q6PEX7 206 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 UNQ5815/PRO19632Q6UWF5 114 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 TTC9CQ8N5M4 171 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 OR11H4Q8NGC9 324 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 TMEM68Q96MH6 324 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 ZNF580Q9UK33 172 aa11.69□□□□□ -0.54
TRIM28-207ENST00000597136 NPIPB5A8MRT5 1133 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 H3BP45 60 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 TSC22D2O75157 780 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 TSPAN15O95858 294 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 IFNA10P01566 189 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 IGHG4P01861 327 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 C1QBP02746 253 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 CRYGCP07315 174 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 CTRB1P17538 263 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms