RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 MS4A10Q96PG2 267 aa10.65□□□□□ -0.7
VMP1-210ENST00000589823 MDFIQ99750 246 aa10.65□□□□□ -0.7
VMP1-210ENST00000589823 SLA2Q9H6Q3 261 aa10.65□□□□□ -0.7
VMP1-210ENST00000589823 TCRBV4S1A1TA0A5B7 111 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 SYNGR2O43760 224 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 SIX6O95475 246 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 TRGV3P03979 118 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 HIST1H1BP16401 226 aaKnown RBP10.64□□□□□ -0.71
VMP1-210ENST00000589823 RAB9AP51151 201 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 SUB1P53999 127 aaKnown RBP eCLIP10.64□□□□□ -0.71
VMP1-210ENST00000589823 TPPP2P59282 170 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 CYCSP99999 105 aaKnown RBP10.64□□□□□ -0.71
VMP1-210ENST00000589823 ID3Q02535 119 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 OR1L6Q8NGR2 347 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 CIB3Q96Q77 187 aaPredicted RBP10.64□□□□□ -0.71
VMP1-210ENST00000589823 ZNF747Q9BV97 191 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 MAGT1Q9H0U3 335 aa10.64□□□□□ -0.71
VMP1-210ENST00000589823 F11RQ9Y624 299 aaKnown RBP10.64□□□□□ -0.71
VMP1-210ENST00000589823 TET2Q6N021 2002 aaPredicted RBP10.63□□□□□ -0.71
VMP1-210ENST00000589823 BRI3O95415 125 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 LY86O95711 162 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 PRH1P02810 166 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 RPLP1P05386 114 aaKnown RBP10.63□□□□□ -0.71
VMP1-210ENST00000589823 IAPPP10997 89 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 HTR2BP41595 481 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 KRTAP10-3P60369 221 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 POLR2GP62487 172 aaKnown RBP eCLIP10.63□□□□□ -0.71
VMP1-210ENST00000589823 SLC25A24Q6NUK1 477 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 C19orf35Q6ZS72 473 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 LCNL1Q6ZST4 164 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 RNF152Q8N8N0 203 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 OR1P1Q8NH06 330 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 P2RX4Q99571 388 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 KLK15Q9H2R5 256 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 ZFP57Q9NU63 452 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 THYN1Q9P016 225 aa10.63□□□□□ -0.71
VMP1-210ENST00000589823 TSSC4Q9Y5U2 329 aaPredicted RBP10.63□□□□□ -0.71
VMP1-210ENST00000589823 A0A0G2JLM5 398 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 MBPP02686 304 aaPredicted RBP10.62□□□□□ -0.71
VMP1-210ENST00000589823 RRAS2P62070 204 aaPredicted RBP10.62□□□□□ -0.71
VMP1-210ENST00000589823 CD83Q01151 205 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 FCN2Q15485 313 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 TCTEX1D4Q5JR98 221 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 NOXA1Q86UR1 476 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 ZNF114Q8NC26 417 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 NECAP1Q8NC96 275 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 CITED1Q99966 193 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 CITED2Q99967 270 aaPredicted RBP10.62□□□□□ -0.71
VMP1-210ENST00000589823 NMES1Q9C002 83 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 LSM5Q9Y4Y9 91 aaKnown RBP10.62□□□□□ -0.71
VMP1-210ENST00000589823 U3KQ87 197 aa10.62□□□□□ -0.71
VMP1-210ENST00000589823 TRBV9A0A0B4J1U6 114 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 FAM223BA6NKX1 122 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 SSSCA1O60232 199 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 OR2J3O76001 311 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 IFNA10P01566 189 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 RNASE2P10153 161 aaKnown RBP10.61□□□□□ -0.71
VMP1-210ENST00000589823 NPY1RP25929 384 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 H2BFSP57053 126 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 S100A10P60903 97 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 RPP30P78346 268 aaKnown RBP10.61□□□□□ -0.71
VMP1-210ENST00000589823 RHOGP84095 191 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 SRSF4Q08170 494 aaKnown RBP10.61□□□□□ -0.71
VMP1-210ENST00000589823 SHISA2Q6UWI4 295 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 Q6ZNX1 250 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 FAM223AQ8IWN6 122 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 ZNF491Q8N8L2 437 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 SLC24A4Q8NFF2 622 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 MISP3Q96FF7 219 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 USMG5Q96IX5 58 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 FANCD2OSQ96PS1 177 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 FBXL7Q9UJT9 491 aa10.61□□□□□ -0.71
VMP1-210ENST00000589823 RCL1Q9Y2P8 373 aaKnown RBP10.61□□□□□ -0.71
VMP1-210ENST00000589823 IGLV11-55A0A075B6I3 123 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 A0A1W2PRX2 142 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 NUDT19A8MXV4 375 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 K7EPK0 472 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 L7N2F9 121 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 CORTO00230 105 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 RLN2P04090 185 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 CXCL3P19876 107 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 PVALBP20472 110 aaPredicted RBP10.6□□□□□ -0.71
VMP1-210ENST00000589823 CDX1P47902 265 aaPredicted RBP10.6□□□□□ -0.71
VMP1-210ENST00000589823 ATP5IP56385 69 aaPredicted RBP10.6□□□□□ -0.71
VMP1-210ENST00000589823 RPL23AP62750 156 aaKnown RBP10.6□□□□□ -0.71
VMP1-210ENST00000589823 VAMP2P63027 116 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 DEFA5Q01523 94 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 ATP5G2Q06055 141 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 IL15RAQ13261 267 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 RAB32Q13637 225 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 KLK9Q2XQG4 91 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 BSXQ3C1V8 233 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 C2orf83Q53S99 150 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 HIST2H2BDQ6DRA6 164 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 C11orf87Q6NUJ2 197 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 NDUFA11Q86Y39 141 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 OR11H7Q8NGC8 314 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 MYOZ3Q8TDC0 251 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 UBE2E2Q96LR5 201 aa10.6□□□□□ -0.71
VMP1-210ENST00000589823 RAB40CQ96S21 281 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms