RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 TMEM56-RWDD3S4R434 201 aa4.22□□□□□ -1.73
VMP1-208ENST00000588617 LTBP4Q8N2S1 1624 aa4.21□□□□□ -1.73
VMP1-208ENST00000588617 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.21□□□□□ -1.73
VMP1-208ENST00000588617 TXNDC9O14530 226 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 OR4E1P0C645 316 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 CPMP14384 443 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 CSN1S1P47710 185 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 KRTAP12-2P59991 146 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 SNCBQ16143 134 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 ARHGAP11BQ3KRB8 267 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 WDR59Q6PJI9 974 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 CLDND2Q8NHS1 167 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 FAM172AQ8WUF8 416 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 EFCAB1Q9HAE3 211 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 NRXN1Q9ULB1 1477 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 E9PCH4 1651 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 PPRC1Q5VV67 1664 aaKnown RBP4.21□□□□□ -1.74
VMP1-208ENST00000588617 CACNA1SQ13698 1873 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 SPHKAPQ2M3C7 1700 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 ADGRB3O60242 1522 aa4.21□□□□□ -1.74
VMP1-208ENST00000588617 SEC16AO15027 2179 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 ATG2BQ96BY7 2078 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 KTN1Q86UP2 1357 aaKnown RBP4.2□□□□□ -1.74
VMP1-208ENST00000588617 ROBO3Q96MS0 1386 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 SERPINE1P05121 402 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 HBA1P69905 142 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 C12orf74Q32Q52 190 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 ZNF561Q8N587 486 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 OR10D4PQ8NGN7 298 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 NIPSNAP1Q9BPW8 284 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 CCDC90BQ9GZT6 254 aa4.2□□□□□ -1.74
VMP1-208ENST00000588617 C11orf68Q9H3H3 251 aaKnown RBP4.2□□□□□ -1.74
VMP1-208ENST00000588617 MRPL16Q9NX20 251 aaKnown RBP4.2□□□□□ -1.74
VMP1-208ENST00000588617 MDFIC2A0A1B0GVS7 189 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 VGLL3A8MV65 326 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 C2orf74A8MZ97 194 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 NPYP01303 97 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 COL8A2P25067 703 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 BLVRBP30043 206 aaPredicted RBP4.19□□□□□ -1.74
VMP1-208ENST00000588617 OR5C1Q8NGR4 320 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 GNPDA2Q8TDQ7 276 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 TRABDQ9H4I3 376 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 TXNL4BQ9NX01 149 aaKnown RBP4.19□□□□□ -1.74
VMP1-208ENST00000588617 FUT9Q9Y231 359 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 PIK3C2BO00750 1634 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 CLTCL1P53675 1640 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 TRPM1Q7Z4N2 1603 aa4.19□□□□□ -1.74
VMP1-208ENST00000588617 SCAF11Q99590 1463 aaKnown RBP4.18□□□□□ -1.74
VMP1-208ENST00000588617 CEP152O94986 1710 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 RTL1A6NKG5 1358 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 MADDQ8WXG6 1647 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 hCG_1818297A0A087WSY0 165 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 EXOC1LA0A1B0GW35 172 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 A8MT66 165 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 ATG12O94817 140 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 CDS2O95674 445 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 FXYD7P58549 80 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 AP1S1P61966 158 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 C9orf64Q5T6V5 341 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 TRIQKQ629K1 86 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 TMPPEQ6ZT21 453 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 CMTM2Q8TAZ6 248 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 ZNF675Q8TD23 568 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 FGF13Q92913 245 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 LCTP09848 1927 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 SETBP1Q9Y6X0 1596 aa4.18□□□□□ -1.74
VMP1-208ENST00000588617 DPRXA6NFQ7 191 aa4.17□□□□□ -1.74
VMP1-208ENST00000588617 GZMBP10144 247 aa4.17□□□□□ -1.74
VMP1-208ENST00000588617 XCL1P47992 114 aa4.17□□□□□ -1.74
VMP1-208ENST00000588617 BAMBIQ13145 260 aa4.17□□□□□ -1.74
VMP1-208ENST00000588617 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.17□□□□□ -1.74
VMP1-208ENST00000588617 SMCR5Q8TEV8 140 aa4.17□□□□□ -1.74
VMP1-208ENST00000588617 MRPL40Q9NQ50 206 aaKnown RBP4.17□□□□□ -1.74
VMP1-208ENST00000588617 UTP11Q9Y3A2 253 aaKnown RBP4.17□□□□□ -1.74
VMP1-208ENST00000588617 HSPE1-MOB4S4R3N1 261 aa4.17□□□□□ -1.74
VMP1-208ENST00000588617 ERVK-7P63135 1459 aa4.17□□□□□ -1.74
VMP1-208ENST00000588617 KIF13AQ9H1H9 1805 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 CACNA1DQ01668 2161 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 DOCK5Q9H7D0 1870 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 SYNMO15061 1565 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 UGGT1Q9NYU2 1555 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 TRAV9-1A0A075B6T8 112 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 IGHV3-15A0A0B4J1V0 119 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 H3BPC8 53 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 IFNA1P01562 189 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 PRB2P02812 416 aaPredicted RBP4.16□□□□□ -1.74
VMP1-208ENST00000588617 RBP1P09455 135 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 AZU1P20160 251 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 IGFBP7Q16270 282 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 OR11H6Q8NGC7 330 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 MINOS1-NBL1R4GNA1 71 aa4.16□□□□□ -1.74
VMP1-208ENST00000588617 POLR1AO95602 1720 aaPredicted RBP4.15□□□□□ -1.74
VMP1-208ENST00000588617 HMGB3O15347 200 aaKnown RBP4.15□□□□□ -1.75
VMP1-208ENST00000588617 ZNF682O95780 498 aa4.15□□□□□ -1.75
VMP1-208ENST00000588617 C8GP07360 202 aa4.15□□□□□ -1.75
VMP1-208ENST00000588617 ERP29P30040 261 aaKnown RBP4.15□□□□□ -1.75
VMP1-208ENST00000588617 TAS2R41P59536 307 aa4.15□□□□□ -1.75
VMP1-208ENST00000588617 RAB14P61106 215 aa4.15□□□□□ -1.75
VMP1-208ENST00000588617 HSPE1P61604 102 aaKnown RBP4.15□□□□□ -1.75
VMP1-208ENST00000588617 AKR1C1Q04828 323 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms