RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 AKR1C4P17516 323 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 Q56UQ5 140 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 ZNF57Q68EA5 555 aaPredicted RBP8.33□□□□□ -1.08
CLIP3-203ENST00000586457 GTSCR1Q86UQ5 136 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 VN1R17PQ8TDU5 208 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 MISP3Q96FF7 219 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 TP53RKQ96S44 253 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 B9D2Q9BPU9 175 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 NAA60Q9H7X0 242 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 TMEM14BQ9NUH8 114 aa8.33□□□□□ -1.08
CLIP3-203ENST00000586457 F11RQ9Y624 299 aaKnown RBP8.33□□□□□ -1.08
CLIP3-203ENST00000586457 CGB1A6NKQ9 187 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 IGLV1-51P01701 117 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 HLA-AP01891 365 aaKnown RBP8.32□□□□□ -1.08
CLIP3-203ENST00000586457 OR5AC1P0C628 307 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 NHLRC4P0CG21 123 aaPredicted RBP8.32□□□□□ -1.08
CLIP3-203ENST00000586457 GPR183P32249 361 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 HOXA1P49639 335 aaPredicted RBP8.32□□□□□ -1.08
CLIP3-203ENST00000586457 PRCDQ00LT1 54 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 WT1-ASQ06250 92 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 HAPLN4Q86UW8 402 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 GPHB5Q86YW7 130 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 FAM219AQ8IW50 185 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 TMEM222Q9H0R3 208 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 ZC4H2Q9NQZ6 224 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.32□□□□□ -1.08
CLIP3-203ENST00000586457 C21orf62Q9NYP8 219 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 CACFD1Q9UGQ2 172 aa8.32□□□□□ -1.08
CLIP3-203ENST00000586457 TNCP24821 2201 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 IGHV3-21A0A0B4J1V1 117 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 MFSD2BA6NFX1 497 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 OR2T8A6NH00 312 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 CENPXA8MT69 81 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 LGALS9O00182 355 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 SCGB2A1O75556 95 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 IGKV1-39P01597 117 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 IGKV1D-39P04432 117 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 CSN3P07498 182 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 UCP1P25874 307 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 GUCA2BQ16661 112 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 TMEM268Q5VZI3 342 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 TRIQKQ629K1 86 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 SPSB3Q6PJ21 355 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 OR2K2Q8NGT1 345 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 OR1P1Q8NH06 330 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 RBPMSQ93062 196 aaKnown RBP8.31□□□□□ -1.08
CLIP3-203ENST00000586457 PINX1Q96BK5 328 aaKnown RBP8.31□□□□□ -1.08
CLIP3-203ENST00000586457 BSCL2Q96G97 398 aaPredicted RBP8.31□□□□□ -1.08
CLIP3-203ENST00000586457 RTBDNQ9BSG5 229 aaPredicted RBP8.31□□□□□ -1.08
CLIP3-203ENST00000586457 TUBA4BQ9H853 241 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 SIGLEC8Q9NYZ4 499 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 TECRQ9NZ01 308 aaKnown RBP8.31□□□□□ -1.08
CLIP3-203ENST00000586457 GPR132Q9UNW8 380 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 UFC1Q9Y3C8 167 aa8.31□□□□□ -1.08
CLIP3-203ENST00000586457 CRYM-AS1A6NIL9 109 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 NUPL2O15504 423 aaKnown RBP8.3□□□□□ -1.08
CLIP3-203ENST00000586457 CDS2O95674 445 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 IGKV1-5P01602 117 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 FOLR2P14207 255 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 ETV6P41212 452 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 MFAP4P55083 255 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 SRPXP78539 464 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 IZUMO4Q1ZYL8 232 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 SPINK9Q5DT21 86 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 RBPMS2Q6ZRY4 209 aaKnown RBP8.3□□□□□ -1.08
CLIP3-203ENST00000586457 TMED4Q7Z7H5 227 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 OR2C3Q8N628 320 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 ZNF502Q8TBZ5 544 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 SCARB1Q8WTV0 552 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 DEDD2Q8WXF8 326 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 CCDC140Q96MF4 163 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 SOSTQ9BQB4 213 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 C5orf66Q9H5L9 145 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 HEYLQ9NQ87 328 aaPredicted RBP8.3□□□□□ -1.08
CLIP3-203ENST00000586457 SLC2A8Q9NY64 477 aa8.3□□□□□ -1.08
CLIP3-203ENST00000586457 LSM4Q9Y4Z0 139 aaKnown RBP8.3□□□□□ -1.08
CLIP3-203ENST00000586457 A0A0B4J293 547 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 IGHV3-35A0A0C4DH35 117 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 C2orf70A6NJV1 201 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 DBX1A6NMT0 343 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 CEBPZOSA8MTT3 80 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 CORTO00230 105 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 ST8SIA3O43173 380 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 TGOLN2O43493 480 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 GNG7O60262 68 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 YIF1AO95070 293 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 CBLN1P23435 193 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 SPCS3P61009 180 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 RELQ04864 619 aaPredicted RBP8.29□□□□□ -1.08
CLIP3-203ENST00000586457 KLK9Q2XQG4 91 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 LGI3Q8N145 548 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 DUSP18Q8NEJ0 188 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 GLYATL2Q8WU03 294 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 MARC2Q969Z3 335 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 TXN2Q99757 166 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 ASCL2Q99929 193 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 SLC25A21Q9BQT8 299 aaPredicted RBP8.29□□□□□ -1.08
CLIP3-203ENST00000586457 C20orf24Q9BUV8 137 aa8.29□□□□□ -1.08
CLIP3-203ENST00000586457 RBM38Q9H0Z9 239 aaKnown RBP8.29□□□□□ -1.08
CLIP3-203ENST00000586457 HIPK2Q9H2X6 1198 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms