RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 SSX3Q99909 188 aa10.07□□□□□ -0.8
VMP1-202ENST00000585847 ZNF430Q9H8G1 570 aaPredicted RBP10.07□□□□□ -0.8
VMP1-202ENST00000585847 NDUFA4L2Q9NRX3 87 aa10.07□□□□□ -0.8
VMP1-202ENST00000585847 METTL1Q9UBP6 276 aaKnown RBP10.07□□□□□ -0.8
VMP1-202ENST00000585847 UBQLN2Q9UHD9 624 aa10.07□□□□□ -0.8
VMP1-202ENST00000585847 DNAJC9-AS1A6NH13 148 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 MSGN1A6NI15 193 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 HOXA3O43365 443 aaPredicted RBP10.06□□□□□ -0.8
VMP1-202ENST00000585847 MPDU1O75352 247 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 TMEM50AO95807 157 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 IFNA5P01569 189 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 OR8U8P0C7N1 319 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 TMEM11P17152 192 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 NPY1RP25929 384 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 SNCAP37840 140 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 RPL27AP46776 148 aaKnown RBP10.06□□□□□ -0.8
VMP1-202ENST00000585847 RAB5CP51148 216 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 RAB14P61106 215 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 HES1Q14469 280 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 PLGLAQ15195 96 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 IZUMO4Q1ZYL8 232 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 C5orf64Q2M2E5 130 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 LRRC75BQ2VPJ9 315 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 BSXQ3C1V8 233 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 C2orf83Q53S99 150 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 SCARB1Q8WTV0 552 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 ST8SIA2Q92186 375 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 DUX5Q96PT3 197 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 PLSCR3Q9NRY6 295 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 ANK2Q01484 3957 aa10.06□□□□□ -0.8
VMP1-202ENST00000585847 TEX50A0A1B0GTY4 177 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 IGSF23A1L1A6 192 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 H3BUX3 64 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 IFNA10P01566 189 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 HLA-DRB1P01911 266 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 IAPPP10997 89 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 CD24P25063 80 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 DLK1P80370 383 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 SPANXN5Q5MJ07 72 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 ZNF562Q6V9R5 426 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 LILRB2Q8N423 598 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 ZNF680Q8NEM1 530 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 OR5C1Q8NGR4 320 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 RNASEH2CQ8TDP1 164 aaKnown RBP10.05□□□□□ -0.8
VMP1-202ENST00000585847 CACNG8Q8WXS5 425 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 ZDHHC16Q969W1 377 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 TMEM147Q9BVK8 224 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 ARV1Q9H2C2 271 aa10.05□□□□□ -0.8
VMP1-202ENST00000585847 IGHV3-72A0A0B4J1Y9 119 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 A6NDX4 124 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 BTBD17A6NE02 478 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 FAM24AA6NFZ4 105 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 UMAD1C9J7I0 102 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 SEC11BP0C7V7 166 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 SLC38A11Q08AI6 406 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 VWC2Q2TAL6 325 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 ZNF418Q8TF45 676 aaPredicted RBP10.04□□□□□ -0.8
VMP1-202ENST00000585847 UQCC1Q9NVA1 299 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 MOB4Q9Y3A3 225 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 BOLA1Q9Y3E2 137 aa10.04□□□□□ -0.8
VMP1-202ENST00000585847 TRAV3A0A0B4J244 114 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 CLDN34H7C241 214 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 TCF21O43680 179 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 GPX4P36969 197 aaPredicted RBP10.03□□□□□ -0.8
VMP1-202ENST00000585847 EXOSC2Q13868 293 aaKnown RBP10.03□□□□□ -0.8
VMP1-202ENST00000585847 LY6EQ16553 131 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 ETFRF1Q6IPR1 90 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 TMEM86BQ8N661 226 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 SSMEM1Q8WWF3 244 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 RITA1Q96K30 269 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 RASL11BQ9BPW5 248 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 GINS3Q9BRX5 216 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 PSMG3Q9BT73 122 aaPredicted RBP10.03□□□□□ -0.8
VMP1-202ENST00000585847 SLC25A32Q9H2D1 315 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 CYTL1Q9NRR1 136 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 TNFRSF19Q9NS68 423 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 ZNF580Q9UK33 172 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 TIMM9Q9Y5J7 89 aa10.03□□□□□ -0.8
VMP1-202ENST00000585847 RPS10-NUDT3A0A1W2PQS6 291 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 C15orf62A8K5M9 175 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 H3BP45 60 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 TRIM77I1YAP6 450 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 KCNAB3O43448 404 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 RAB31Q13636 194 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 TNXAQ16473 311 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 PVRIGQ6DKI7 326 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 SLC25A24Q6NUK1 477 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 DPPA3Q6W0C5 159 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 ETV3LQ6ZN32 361 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 OR1P1Q8NH06 330 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 SCGB1C1Q8TD33 95 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 SRSF12Q8WXF0 261 aaKnown RBP10.02□□□□□ -0.81
VMP1-202ENST00000585847 TAF15Q92804 592 aaKnown RBP eCLIP10.02□□□□□ -0.81
VMP1-202ENST00000585847 RBM14Q96PK6 669 aaKnown RBP10.02□□□□□ -0.81
VMP1-202ENST00000585847 OR4C12Q96R67 309 aa10.02□□□□□ -0.81
VMP1-202ENST00000585847 C17orf112F2Z3M2 114 aa10.01□□□□□ -0.81
VMP1-202ENST00000585847 SCGB2A1O75556 95 aa10.01□□□□□ -0.81
VMP1-202ENST00000585847 CST7O76096 145 aa10.01□□□□□ -0.81
VMP1-202ENST00000585847 NXPH3O95157 252 aa10.01□□□□□ -0.81
VMP1-202ENST00000585847 CNIH1O95406 144 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms