RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 VENTXO95231 258 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 IGLV2-23P01705 113 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 CRYGBP07316 175 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 TAGLN2P37802 199 aaKnown RBP6.41□□□□□ -1.38
VPS39-213ENST00000570062 RPL27AP46776 148 aaKnown RBP6.41□□□□□ -1.38
VPS39-213ENST00000570062 CAMLGP49069 296 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 TMEM267Q0VDI3 215 aaPredicted RBP6.41□□□□□ -1.38
VPS39-213ENST00000570062 PLGLAQ15195 96 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 BSXQ3C1V8 233 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 OR8G2PQ6IF36 304 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 HCP5Q6MZN7 132 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 COMMD7Q86VX2 200 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 SLC7A5P1Q8MH63 180 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 HSD17B11Q8NBQ5 300 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 ZNF114Q8NC26 417 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 C22orf15Q8WYQ4 148 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 TAF15Q92804 592 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS39-213ENST00000570062 TMEM68Q96MH6 324 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 OR4C12Q96R67 309 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 PBDC1Q9BVG4 233 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 C19orf24Q9BVV8 132 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 HINT2Q9BX68 163 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 WFDC1Q9HC57 220 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 METTL1Q9UBP6 276 aaKnown RBP6.41□□□□□ -1.38
VPS39-213ENST00000570062 CSMD1Q96PZ7 3565 aa6.41□□□□□ -1.38
VPS39-213ENST00000570062 RAI1Q7Z5J4 1906 aaPredicted RBP6.4□□□□□ -1.38
VPS39-213ENST00000570062 IGHV4-30-2A0A087WSY4 118 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 TRAV3A0A0B4J244 114 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 IGHV1-69DA0A0B4J2H0 117 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 C15orf62A8K5M9 175 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 SCGB2A1O75556 95 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 TSPAN15O95858 294 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 IGHV1-69P01742 117 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 PJVKQ0ZLH3 352 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 MMDQ15546 238 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 SSX2Q16385 188 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 HIST2H2BCQ6DN03 193 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 TEPPQ6URK8 271 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 ZNF562Q6V9R5 426 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 LYPD6BQ8NI32 183 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 CFHR4Q92496 578 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 RBMXL1Q96E39 390 aaKnown RBP6.4□□□□□ -1.38
VPS39-213ENST00000570062 TBX15Q96SF7 602 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 KRTAP4-7Q9BYR0 210 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 MEGF9Q9H1U4 602 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 ZNF430Q9H8G1 570 aaPredicted RBP6.4□□□□□ -1.38
VPS39-213ENST00000570062 ZNRD1Q9P1U0 126 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 PITPNC1Q9UKF7 332 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 WDR83OSQ9Y284 106 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 HILPDAQ9Y5L2 63 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 ROS1P08922 2347 aa6.4□□□□□ -1.38
VPS39-213ENST00000570062 TRAV1-1A0A0B4J248 108 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 FAM157AC9JC47 383 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 M0QZK8 103 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 NDUFS6O75380 124 aaKnown RBP6.39□□□□□ -1.39
VPS39-213ENST00000570062 CNIH1O95406 144 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 MT-CO2P00403 227 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 CA2P00918 260 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 IGKV1D-33P01593 117 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 IGKV1-33P01594 117 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 FABP1P07148 127 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 OPRK1P41145 380 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 PPT1P50897 306 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 SELENOTP62341 195 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 PMS2P11Q13670 270 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 DIAPH2-AS1Q14236 149 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 HES1Q14469 280 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 PEA15Q15121 130 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 ACOT6Q3I5F7 207 aaPredicted RBP6.39□□□□□ -1.39
VPS39-213ENST00000570062 KIAA2026Q5HYC2 2103 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 CLEC9AQ6UXN8 241 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 C16orf82Q7Z2V1 217 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 TMEM144Q7Z5S9 345 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 S100A7AQ86SG5 101 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 OR1P1Q8NH06 330 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 EAF1Q96JC9 268 aaPredicted RBP6.39□□□□□ -1.39
VPS39-213ENST00000570062 SLC35E1Q96K37 410 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 THYN1Q9P016 225 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 FAM96BQ9Y3D0 163 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 PKDREJQ9NTG1 2253 aa6.39□□□□□ -1.39
VPS39-213ENST00000570062 ABCA4P78363 2273 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 IGHV3-72A0A0B4J1Y9 119 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 CENPVL3A0A0U1RRI6 287 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 UBE2L5PA0A1B0GUS4 154 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 A0A1B0GW64 132 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 MFSD2BA6NFX1 497 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 IFNA1P01562 189 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 FBP1P09467 338 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 TMEM11P17152 192 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 M6PRP20645 277 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 MDKP21741 143 aaPredicted RBP6.38□□□□□ -1.39
VPS39-213ENST00000570062 FGF7P21781 194 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 S100A7P31151 101 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 SAA4P35542 130 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 RPL29P47914 159 aaKnown RBP6.38□□□□□ -1.39
VPS39-213ENST00000570062 CD69Q07108 199 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 ARL16Q0P5N6 197 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 TNXAQ16473 311 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 C5orf64Q2M2E5 130 aa6.38□□□□□ -1.39
VPS39-213ENST00000570062 KRTAP21-3Q3LHN1 58 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms