RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 UBE2CO00762 179 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 HLA-DMAP28067 261 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 Q56UQ5 140 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 WFDC3Q8IUB2 231 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 LYSMD2Q8IV50 215 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 UBAC2Q8NBM4 344 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 OR1P1Q8NH06 330 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 SLC25A46Q96AG3 418 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 CHRDL1Q9BU40 450 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 C20orf24Q9BUV8 137 aa13.93□□□□□ -0.18
CLN3-218ENST00000565688 PLECQ15149 4684 aaKnown RBP13.93□□□□□ -0.18
CLN3-218ENST00000565688 A0A087WXM4 84 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 IGHV3-21A0A0B4J1V1 117 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 C15orf61A6NNL5 157 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 F8W735 103 aaPredicted RBP13.92□□□□□ -0.18
CLN3-218ENST00000565688 BMI1P35226 326 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 ADMP35318 185 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 TSPAN5P62079 268 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 LSM3P62310 102 aaKnown RBP13.92□□□□□ -0.18
CLN3-218ENST00000565688 PHLDA2Q53GA4 152 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 GPX8Q8TED1 209 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 CMTM3Q96MX0 182 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 SCPEP1Q9HB40 452 aa13.92□□□□□ -0.18
CLN3-218ENST00000565688 KIR2DL5BA0A0G2JN68 375 aa13.91□□□□□ -0.18
CLN3-218ENST00000565688 KIR2DL5BA0A0G2JPC4 375 aa13.91□□□□□ -0.18
CLN3-218ENST00000565688 SPRY2O43597 315 aa13.91□□□□□ -0.18
CLN3-218ENST00000565688 APOA1P02647 267 aa13.91□□□□□ -0.18
CLN3-218ENST00000565688 RELQ04864 619 aaPredicted RBP13.91□□□□□ -0.18
CLN3-218ENST00000565688 KIR2DL5AQ8N109 375 aa13.91□□□□□ -0.18
CLN3-218ENST00000565688 KIR2DL5BQ8NHK3 375 aa13.91□□□□□ -0.18
CLN3-218ENST00000565688 UBQLN2Q9UHD9 624 aa13.91□□□□□ -0.18
CLN3-218ENST00000565688 NUPL2O15504 423 aaKnown RBP13.9□□□□□ -0.18
CLN3-218ENST00000565688 EIF4EP06730 217 aaKnown RBP13.9□□□□□ -0.18
CLN3-218ENST00000565688 CTSGP08311 255 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 FCGR2BP31994 310 aaPredicted RBP13.9□□□□□ -0.18
CLN3-218ENST00000565688 TNFRSF9Q07011 255 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 ODF3L2Q3SX64 289 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 H2BFWTQ7Z2G1 175 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 TBC1D26Q86UD7 250 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 STPG3Q8N7X2 389 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 OR4A16Q8NH70 328 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 TXN2Q99757 166 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 SMPXQ9UHP9 88 aa13.9□□□□□ -0.18
CLN3-218ENST00000565688 CXorf65A6NEN9 183 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 DBX1A6NMT0 343 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 TNFAIP8O95379 198 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 RCVRNP35243 200 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 UCP3P55916 312 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 DEFB135Q30KP9 77 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 ZNF114Q8NC26 417 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 SEC22AQ96IW7 307 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 C6orf62Q9GZU0 229 aaPredicted RBP13.89□□□□□ -0.19
CLN3-218ENST00000565688 COMMD3Q9UBI1 195 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 BIRC6Q9NR09 4857 aa13.89□□□□□ -0.19
CLN3-218ENST00000565688 HYDINQ4G0P3 5121 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 IGHV3OR16-8A0A075B7F1 116 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 A0A0J9YWU9 116 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 NUPR2A6NF83 97 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 ZNF207O43670 478 aaKnown RBP13.88□□□□□ -0.19
CLN3-218ENST00000565688 CTSDP07339 412 aaPredicted RBP13.88□□□□□ -0.19
CLN3-218ENST00000565688 ATF4P18848 351 aaPredicted RBP13.88□□□□□ -0.19
CLN3-218ENST00000565688 MFAP4P55083 255 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 CMC4P56277 68 aaPredicted RBP13.88□□□□□ -0.19
CLN3-218ENST00000565688 LYG2Q86SG7 212 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 MISP3Q96FF7 219 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 GALNT14Q96FL9 552 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 OR10C1Q96KK4 312 aa13.88□□□□□ -0.19
CLN3-218ENST00000565688 ALMS1Q8TCU4 4167 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 IGHV7-4-1A0A0J9YVY3 117 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 I3L2K1 104 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 YIF1AO95070 293 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 PRCDQ00LT1 54 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 SNX29P2Q8IUI4 249 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 TMEM217Q8N7C4 229 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 TMEM116Q8NCL8 245 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 RNF183Q96D59 192 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 RHPN1-AS1Q9BWJ2 59 aa13.87□□□□□ -0.19
CLN3-218ENST00000565688 HSPE1P61604 102 aaKnown RBP13.86□□□□□ -0.19
CLN3-218ENST00000565688 ERHP84090 104 aaKnown RBP13.86□□□□□ -0.19
CLN3-218ENST00000565688 PMS2P11Q13670 270 aa13.86□□□□□ -0.19
CLN3-218ENST00000565688 LINC00476Q8WZB0 136 aa13.86□□□□□ -0.19
CLN3-218ENST00000565688 RNF2Q99496 336 aa13.86□□□□□ -0.19
CLN3-218ENST00000565688 NXF2Q9GZY0 626 aaKnown RBP13.86□□□□□ -0.19
CLN3-218ENST00000565688 TRAV14DV4A0A0A6YYC5 116 aa13.85□□□□□ -0.19
CLN3-218ENST00000565688 CHEK1O14757 476 aa13.85□□□□□ -0.19
CLN3-218ENST00000565688 MT-CO2P00403 227 aa13.85□□□□□ -0.19
CLN3-218ENST00000565688 IGKV1-39P01597 117 aa13.85□□□□□ -0.19
CLN3-218ENST00000565688 IGKV1D-39P04432 117 aa13.85□□□□□ -0.19
CLN3-218ENST00000565688 RPL35AP18077 110 aaKnown RBP13.85□□□□□ -0.19
CLN3-218ENST00000565688 MRGPRFQ96AM1 343 aa13.85□□□□□ -0.19
CLN3-218ENST00000565688 FUNDC2Q9BWH2 189 aa13.85□□□□□ -0.19
CLN3-218ENST00000565688 MAP6D1Q9H9H5 199 aa13.85□□□□□ -0.19
CLN3-218ENST00000565688 GNG7O60262 68 aa13.84□□□□□ -0.19
CLN3-218ENST00000565688 CD5P06127 495 aa13.84□□□□□ -0.19
CLN3-218ENST00000565688 ELK1P19419 428 aa13.84□□□□□ -0.19
CLN3-218ENST00000565688 NCS1P62166 190 aa13.84□□□□□ -0.19
CLN3-218ENST00000565688 ZNF486Q96H40 463 aaPredicted RBP13.84□□□□□ -0.19
CLN3-218ENST00000565688 ZNF414Q96IQ9 312 aa13.84□□□□□ -0.19
CLN3-218ENST00000565688 GINS3Q9BRX5 216 aa13.84□□□□□ -0.19
CLN3-218ENST00000565688 HPGDSO60760 199 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms