RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 FAM106AQ4KMX7 169 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 CCDC190Q86UF4 302 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 GPHB5Q86YW7 130 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 FAM219AQ8IW50 185 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 SGPP2Q8IWX5 399 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 ATP6V0BQ99437 205 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 B9D2Q9BPU9 175 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 RTBDNQ9BSG5 229 aaPredicted RBP10.23□□□□□ -0.77
CLK3-216ENST00000564468 TMEM222Q9H0R3 208 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 C5orf66Q9H5L9 145 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 NAA60Q9H7X0 242 aa10.23□□□□□ -0.77
CLK3-216ENST00000564468 PIGBOS1A0A0B4J2F0 54 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 CRYM-AS1A6NIL9 109 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 PPP5D1E7EU14 171 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 LGALS9O00182 355 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 CDS2O95674 445 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 IGKV1-5P01602 117 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 IGHV3-23P01764 117 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 OR5AC1P0C628 307 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 GP9P14770 177 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 ETV6P41212 452 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 CD69Q07108 199 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 OR2K2Q8NGT1 345 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 OR1P1Q8NH06 330 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 CCDC140Q96MF4 163 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 PLEKHA3Q9HB20 300 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 GAR1Q9NY12 217 aaKnown RBP10.22□□□□□ -0.77
CLK3-216ENST00000564468 LSM4Q9Y4Z0 139 aaKnown RBP10.22□□□□□ -0.77
CLK3-216ENST00000564468 SMAD5-AS1Q9Y6J3 95 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 V9GYH0 126 aa10.22□□□□□ -0.77
CLK3-216ENST00000564468 MFSD2BA6NFX1 497 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 DBX1A6NMT0 343 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 OR2C1O95371 312 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 IFNA17P01571 189 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 CLEC3BP05452 202 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 CSN3P07498 182 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 LCN12Q6JVE5 192 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 PLET1Q6UQ28 207 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 IL34Q6ZMJ4 242 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 OR2C3Q8N628 320 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 SLC35G3Q8N808 338 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 ZNF502Q8TBZ5 544 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 GLYATL2Q8WU03 294 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 RBPMSQ93062 196 aaKnown RBP10.21□□□□□ -0.77
CLK3-216ENST00000564468 PALMDQ9NP74 551 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 CACFD1Q9UGQ2 172 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 DMRT1Q9Y5R6 373 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 S4R3C0 116 aa10.21□□□□□ -0.77
CLK3-216ENST00000564468 P0C879 139 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 ANXA3P12429 323 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 SNCAP37840 140 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 INPP1P49441 399 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 SUB1P53999 127 aaKnown RBP eCLIP10.2□□□□□ -0.78
CLK3-216ENST00000564468 KLF9Q13886 244 aaPredicted RBP10.2□□□□□ -0.78
CLK3-216ENST00000564468 ZNF79Q15937 498 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 SPSB3Q6PJ21 355 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 ZNF114Q8NC26 417 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 DYNLRB2Q8TF09 96 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 IL22RA2Q969J5 263 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 TRIM63Q969Q1 353 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 GALNT14Q96FL9 552 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 BSCL2Q96G97 398 aaPredicted RBP10.2□□□□□ -0.78
CLK3-216ENST00000564468 SLC25A21Q9BQT8 299 aaPredicted RBP10.2□□□□□ -0.78
CLK3-216ENST00000564468 ENY2Q9NPA8 101 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 C21orf62Q9NYP8 219 aa10.2□□□□□ -0.78
CLK3-216ENST00000564468 COL7A1Q02388 2944 aa10.19□□□□□ -0.78
CLK3-216ENST00000564468 A0A0B4J293 547 aa10.19□□□□□ -0.78
CLK3-216ENST00000564468 ZNF320A2RRD8 509 aa10.19□□□□□ -0.78
CLK3-216ENST00000564468 INS-IGF2F8WCM5 200 aa10.19□□□□□ -0.78
CLK3-216ENST00000564468 ST8SIA3O43173 380 aa10.19□□□□□ -0.78
CLK3-216ENST00000564468 HLA-AP01891 365 aaKnown RBP10.19□□□□□ -0.78
CLK3-216ENST00000564468 NHLRC4P0CG21 123 aaPredicted RBP10.19□□□□□ -0.78
CLK3-216ENST00000564468 GPR183P32249 361 aa10.19□□□□□ -0.78
CLK3-216ENST00000564468 ZNF57Q68EA5 555 aaPredicted RBP10.19□□□□□ -0.78
CLK3-216ENST00000564468 SELENOHQ8IZQ5 122 aaKnown RBP10.19□□□□□ -0.78
CLK3-216ENST00000564468 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.19□□□□□ -0.78
CLK3-216ENST00000564468 TECRQ9NZ01 308 aaKnown RBP10.19□□□□□ -0.78
CLK3-216ENST00000564468 TMEM56-RWDD3S4R434 201 aa10.19□□□□□ -0.78
CLK3-216ENST00000564468 RYR3Q15413 4870 aa10.19□□□□□ -0.78
CLK3-216ENST00000564468 C2orf70A6NJV1 201 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 CORTO00230 105 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 TGOLN2O43493 480 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 AKR1C4P17516 323 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 HOXA1P49639 335 aaPredicted RBP10.18□□□□□ -0.78
CLK3-216ENST00000564468 MFAP2P55001 183 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 MFAP4P55083 255 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 SRPXP78539 464 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 IZUMO4Q1ZYL8 232 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 TMEM268Q5VZI3 342 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 TRIQKQ629K1 86 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 HAPLN4Q86UW8 402 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 OR52E5Q8NH55 327 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 SCARB1Q8WTV0 552 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 MARC2Q969Z3 335 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 MISP3Q96FF7 219 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 WWC2-AS2Q96NR7 200 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 TXN2Q99757 166 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 SRRQ9GZT4 340 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 UFC1Q9Y3C8 167 aa10.18□□□□□ -0.78
CLK3-216ENST00000564468 NAP1L6A6NFF2 107 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms