RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SMIM31A0A1B0GVY4 71 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 DBX1A6NMT0 343 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 C15orf61A6NNL5 157 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 S100GP29377 79 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 FCGR2BP31994 310 aaPredicted RBP12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 ADMP35318 185 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 SLC38A6Q8IZM9 456 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 OR1P1Q8NH06 330 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 SEC22AQ96IW7 307 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 OVOL2Q9BRP0 275 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 CHRDL1Q9BU40 450 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 FUNDC2Q9BWH2 189 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 BIRC6Q9NR09 4857 aa12.83□□□□□ -0.36
VPS9D1-203ENST00000563798 RCVRNP35243 200 aa12.82□□□□□ -0.36
VPS9D1-203ENST00000563798 TSPAN5P62079 268 aa12.82□□□□□ -0.36
VPS9D1-203ENST00000563798 WFDC3Q8IUB2 231 aa12.82□□□□□ -0.36
VPS9D1-203ENST00000563798 ZNF114Q8NC26 417 aa12.82□□□□□ -0.36
VPS9D1-203ENST00000563798 ZNF414Q96IQ9 312 aa12.82□□□□□ -0.36
VPS9D1-203ENST00000563798 HINT2Q9BX68 163 aa12.82□□□□□ -0.36
VPS9D1-203ENST00000563798 COMMD3Q9UBI1 195 aa12.82□□□□□ -0.36
VPS9D1-203ENST00000563798 C15orf62A8K5M9 175 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 IGKV1-39P01597 117 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 IGKV1D-39P04432 117 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 CTSGP08311 255 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 NCS1P62166 190 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 PHLDA2Q53GA4 152 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 LAMTOR1Q6IAA8 161 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 TBC1D26Q86UD7 250 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 TXN2Q99757 166 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 TP53TG1Q9Y2A0 90 aa12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 EPPK1P58107 5090 aaKnown RBP12.81□□□□□ -0.36
VPS9D1-203ENST00000563798 PLECQ15149 4684 aaKnown RBP12.8□□□□□ -0.36
VPS9D1-203ENST00000563798 JTBO76095 146 aa12.8□□□□□ -0.36
VPS9D1-203ENST00000563798 ELK1P19419 428 aa12.8□□□□□ -0.36
VPS9D1-203ENST00000563798 VBP1P61758 197 aa12.8□□□□□ -0.36
VPS9D1-203ENST00000563798 Q6ZWC4 215 aa12.8□□□□□ -0.36
VPS9D1-203ENST00000563798 I3L2K1 104 aa12.79□□□□□ -0.36
VPS9D1-203ENST00000563798 RND3P61587 244 aa12.79□□□□□ -0.36
VPS9D1-203ENST00000563798 HSPE1P61604 102 aaKnown RBP12.79□□□□□ -0.36
VPS9D1-203ENST00000563798 PRCDQ00LT1 54 aa12.79□□□□□ -0.36
VPS9D1-203ENST00000563798 SNX29P2Q8IUI4 249 aa12.79□□□□□ -0.36
VPS9D1-203ENST00000563798 OR10C1Q96KK4 312 aa12.79□□□□□ -0.36
VPS9D1-203ENST00000563798 SMPXQ9UHP9 88 aa12.79□□□□□ -0.36
VPS9D1-203ENST00000563798 HYDINQ4G0P3 5121 aa12.79□□□□□ -0.36
VPS9D1-203ENST00000563798 IGHV3-21A0A0B4J1V1 117 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 KIR2DL5BA0A0G2JN68 375 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 KIR2DL5BA0A0G2JPC4 375 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 UBE2CO00762 179 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 HPGDSO60760 199 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 RORCP51449 518 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 APOC4P55056 127 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 RELQ04864 619 aaPredicted RBP12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 ODF3L2Q3SX64 289 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 Q56UQ5 140 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 H2BFWTQ7Z2G1 175 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 LHFPL1Q86WI0 220 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 KIR2DL5AQ8N109 375 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 OR4A16Q8NH70 328 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 KIR2DL5BQ8NHK3 375 aa12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 ZNF486Q96H40 463 aaPredicted RBP12.78□□□□□ -0.36
VPS9D1-203ENST00000563798 OR4C46A6NHA9 309 aa12.77□□□□□ -0.37
VPS9D1-203ENST00000563798 INS-IGF2F8WCM5 200 aa12.77□□□□□ -0.37
VPS9D1-203ENST00000563798 MFAP4P55083 255 aa12.77□□□□□ -0.37
VPS9D1-203ENST00000563798 ARRDC1Q8N5I2 433 aa12.77□□□□□ -0.37
VPS9D1-203ENST00000563798 UBAC2Q8NBM4 344 aa12.77□□□□□ -0.37
VPS9D1-203ENST00000563798 C20orf24Q9BUV8 137 aa12.77□□□□□ -0.37
VPS9D1-203ENST00000563798 IGHV7-4-1A0A0J9YVY3 117 aa12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 NUPL2O15504 423 aaKnown RBP12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 P0C879 139 aa12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 ATF4P18848 351 aaPredicted RBP12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 TBPP20226 339 aa12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 TNFRSF9Q07011 255 aa12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 PVRIGQ6DKI7 326 aa12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 MZT2AQ6P582 158 aa12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 MRGPRFQ96AM1 343 aa12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 NXF2Q9GZY0 626 aaKnown RBP12.76□□□□□ -0.37
VPS9D1-203ENST00000563798 M0QYG6 137 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 CHEK1O14757 476 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 SPRY2O43597 315 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 GABARAPO95166 117 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 MT-CO2P00403 227 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 CTSDP07339 412 aaPredicted RBP12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 BMI1P35226 326 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 ERHP84090 104 aaKnown RBP12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 CTF1Q16619 201 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 AP3S1Q92572 193 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 MISP3Q96FF7 219 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 KLK11Q9UBX7 282 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 MTFP1Q9UDX5 166 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 UBQLN2Q9UHD9 624 aa12.75□□□□□ -0.37
VPS9D1-203ENST00000563798 ZNF182P17025 639 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 CMC4P56277 68 aaPredicted RBP12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 RNASE10Q5GAN6 216 aaKnown RBP12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 FAM90A2PQ658T7 463 aa12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 TMEM116Q8NCL8 245 aa12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 C15orf40Q8WUR7 153 aa12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 RNF183Q96D59 192 aa12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 GALNT14Q96FL9 552 aa12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 RNF2Q99496 336 aa12.74□□□□□ -0.37
VPS9D1-203ENST00000563798 RHPN1-AS1Q9BWJ2 59 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms