RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 IGHV3-72A0A0B4J1Y9 119 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 ANKRD34BA5PLL1 514 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 MFSD2BA6NFX1 497 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 C15orf62A8K5M9 175 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 PMS2P5A8MQ11 134 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 INS-IGF2F8WCM5 200 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 RNASEK-C17orf49H0YIS7 233 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 SLC25A17O43808 307 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 MPDU1O75352 247 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 TSPAN9O75954 239 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 TSPAN15O95858 294 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 MOSP00540 346 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 IGLV2-23P01705 113 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 MBP02144 154 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 OPN1MWP04001 364 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 SNRNP70P08621 437 aaKnown RBP7.17□□□□□ -1.26
VPS39-207ENST00000563692 OPN1MW2P0DN77 364 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 OPN1MW3P0DN78 364 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 BRS3P32247 399 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 DLX1P56177 255 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 PRB3Q04118 309 aaPredicted RBP7.17□□□□□ -1.26
VPS39-207ENST00000563692 RAB31Q13636 194 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 PSG5Q15238 335 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 VWC2Q2TAL6 325 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 HCP5Q6MZN7 132 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 Q6ZRG5 221 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 HAPLN4Q86UW8 402 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 COMMD1Q8N668 190 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 OR2T10Q8NGZ9 312 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 TAF15Q92804 592 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS39-207ENST00000563692 SH3BGRL3Q9H299 93 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 HRH4Q9H3N8 390 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 C7orf69Q9H7B7 122 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 NPVFQ9HCQ7 196 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 NDUFA4L2Q9NRX3 87 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 KIAA1456Q9P272 454 aa7.17□□□□□ -1.26
VPS39-207ENST00000563692 UBE2L5PA0A1B0GUS4 154 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 A0A1W2PPI3 338 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 KRBOX1C9JBD0 128 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 FNDC10F2Z333 226 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 I3L521 148 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 HAX1O00165 279 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 RRHO14718 337 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 TIMM23O14925 209 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 CA2P00918 260 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 HBE1P02100 147 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 FAM106CPP0CH98 169 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 COMPP49747 757 aaPredicted RBP7.16□□□□□ -1.26
VPS39-207ENST00000563692 DLK1P80370 383 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 SRSF2Q01130 221 aaKnown RBP7.16□□□□□ -1.26
VPS39-207ENST00000563692 PAX8Q06710 450 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 ZNF616Q08AN1 781 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 PJVKQ0ZLH3 352 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 KLRD1Q13241 179 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 HES1Q14469 280 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 PLGLAQ15195 96 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 SSX2Q16385 188 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 PRSS8Q16651 343 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 C2orf83Q53S99 150 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 PXDC1Q5TGL8 231 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 BTNL8Q6UX41 500 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 RBMS3Q6XE24 437 aaKnown RBP7.16□□□□□ -1.26
VPS39-207ENST00000563692 CENPVQ7Z7K6 275 aaPredicted RBP7.16□□□□□ -1.26
VPS39-207ENST00000563692 PPP1R27Q86WC6 154 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 FAM213BQ8TBF2 198 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 ZNF430Q9H8G1 570 aaPredicted RBP7.16□□□□□ -1.26
VPS39-207ENST00000563692 METTL1Q9UBP6 276 aaKnown RBP7.16□□□□□ -1.26
VPS39-207ENST00000563692 SIGLEC9Q9Y336 463 aa7.16□□□□□ -1.26
VPS39-207ENST00000563692 ANK3Q12955 4377 aaKnown RBP7.15□□□□□ -1.26
VPS39-207ENST00000563692 A0A1W2PRD5 423 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 A0A1W2PRF3 423 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 A0A1W2PRM7 423 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 SMCO3A2RU48 225 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 BTBD17A6NE02 478 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 VENTXO95231 258 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 IGKV1D-33P01593 117 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 IGKV1-33P01594 117 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 CRYGBP07316 175 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 H2AFB1P0C5Y9 115 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 FGF7P21781 194 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 GPX4P36969 197 aaPredicted RBP7.15□□□□□ -1.26
VPS39-207ENST00000563692 RPL27AP46776 148 aaKnown RBP7.15□□□□□ -1.26
VPS39-207ENST00000563692 RUNX1Q01196 453 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 HABP2Q14520 560 aaPredicted RBP7.15□□□□□ -1.26
VPS39-207ENST00000563692 TNXAQ16473 311 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 LHFPL4Q7Z7J7 247 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 LFNGQ8NES3 379 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 NPBQ8NG41 125 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 RITA1Q96K30 269 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 TBX15Q96SF7 602 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 KCNIP2Q9NS61 270 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 PLA2G2EQ9NZK7 142 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 C1RLQ9NZP8 487 aa7.15□□□□□ -1.26
VPS39-207ENST00000563692 FBN1P35555 2871 aaKnown RBP7.15□□□□□ -1.27
VPS39-207ENST00000563692 WNK2Q9Y3S1 2297 aa7.15□□□□□ -1.27
VPS39-207ENST00000563692 NPFFO15130 113 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 NBR2O15453 112 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 CYB5BO43169 146 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 CNIH1O95406 144 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 OR13C7P0DN81 318 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms