RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 SLC35G3Q8N808 338 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 GPR61Q9BZJ8 451 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 PRR13Q9NZ81 148 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 PEF1Q9UBV8 284 aaKnown RBP12.88□□□□□ -0.35
CLK3-207ENST00000562389 DMRT1Q9Y5R6 373 aa12.88□□□□□ -0.35
CLK3-207ENST00000562389 F11RQ9Y624 299 aaKnown RBP12.88□□□□□ -0.35
CLK3-207ENST00000562389 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.87□□□□□ -0.35
CLK3-207ENST00000562389 A0A0B4J2A0 478 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 ANKRD34BA5PLL1 514 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 INS-IGF2F8WCM5 200 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 NDUFB8O95169 186 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 SFT2D2O95562 160 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 SLURP1P55000 103 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 PPP1R1AQ13522 171 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 Q6ZRM9 215 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 OR2C3Q8N628 320 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 GPR146Q96CH1 333 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 PDCD10Q9BUL8 212 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 PLEKHA3Q9HB20 300 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 THYN1Q9P016 225 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 SHPKQ9UHJ6 478 aa12.87□□□□□ -0.35
CLK3-207ENST00000562389 DUXBA0A1W2PPF3 345 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 ZP3P21754 424 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 VAMP1P23763 118 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 HOXD3P31249 432 aaPredicted RBP12.86□□□□□ -0.35
CLK3-207ENST00000562389 LRTM2Q8N967 370 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 ZNF114Q8NC26 417 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 OR1L6Q8NGR2 347 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 OR52E5Q8NH55 327 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 DCUN1D4Q92564 292 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 DLX4Q92988 240 aaPredicted RBP12.86□□□□□ -0.35
CLK3-207ENST00000562389 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.86□□□□□ -0.35
CLK3-207ENST00000562389 CACNG5Q9UF02 275 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 FLVCR2Q9UPI3 526 aa12.86□□□□□ -0.35
CLK3-207ENST00000562389 NBEAL1Q6ZS30 2694 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 OVOL1O14753 267 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 WIPF1O43516 503 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 IFNA17P01571 189 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 TRBV12-3P01733 135 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 MFAP2P55001 183 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 ANKRD55Q3KP44 614 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 PDLIM3Q53GG5 364 aaPredicted RBP12.85□□□□□ -0.35
CLK3-207ENST00000562389 NMSQ5H8A3 153 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 LYZL2Q7Z4W2 148 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 OR1P1Q8NH06 330 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 EEF1AKMT3Q96AZ1 226 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 CXorf58Q96LI9 332 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 NOTCH3Q9UM47 2321 aa12.85□□□□□ -0.35
CLK3-207ENST00000562389 TRBV7-1A0A0A6YYK4 115 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 UPK1BO75841 260 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 SULT1A3P0DMM9 295 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 SULT1A4P0DMN0 295 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 SPCS3P61009 180 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 ERHP84090 104 aaKnown RBP12.84□□□□□ -0.35
CLK3-207ENST00000562389 SPINK9Q5DT21 86 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 C9orf66Q5T8R8 295 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 SLC25A24Q6NUK1 477 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 CCDC140Q96MF4 163 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 CACFD1Q9UGQ2 172 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 TBC1D24Q9ULP9 559 aa12.84□□□□□ -0.35
CLK3-207ENST00000562389 MFSD2BA6NFX1 497 aa12.83□□□□□ -0.36
CLK3-207ENST00000562389 SEC14L6B5MCN3 397 aa12.83□□□□□ -0.36
CLK3-207ENST00000562389 BMPR1BO00238 502 aa12.83□□□□□ -0.36
CLK3-207ENST00000562389 HLA-AP01891 365 aaKnown RBP12.83□□□□□ -0.36
CLK3-207ENST00000562389 HOXA1P49639 335 aaPredicted RBP12.83□□□□□ -0.36
CLK3-207ENST00000562389 ASAH1Q13510 395 aa12.83□□□□□ -0.36
CLK3-207ENST00000562389 VN1R17PQ8TDU5 208 aa12.83□□□□□ -0.36
CLK3-207ENST00000562389 C20orf85Q9H1P6 137 aa12.83□□□□□ -0.36
CLK3-207ENST00000562389 C9orf170A2RU37 121 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 IGHV3-23P01764 117 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 TCRBP04435 133 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 OR4E1P0C645 316 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 ANXA7P20073 488 aaKnown RBP12.82□□□□□ -0.36
CLK3-207ENST00000562389 DEFA6Q01524 100 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 DHRS2Q13268 280 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 KLF5Q13887 457 aaPredicted RBP12.82□□□□□ -0.36
CLK3-207ENST00000562389 SMCO1Q147U7 214 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 RPEL1Q2QD12 228 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 ZNF502Q8TBZ5 544 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 ENY2Q9NPA8 101 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 S4R3C0 116 aa12.82□□□□□ -0.36
CLK3-207ENST00000562389 A0A1B0GU03 582 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 SLC25A6P12236 298 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 INSL3P51460 131 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 EGFEM1PQ0D2K5 195 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 MZT2BQ6NZ67 158 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 ACSM6Q6P461 480 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 CLEC19AQ6UXS0 136 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 LYG2Q86SG7 212 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 ATP6V0BQ99437 205 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 TMED3Q9Y3Q3 217 aa12.81□□□□□ -0.36
CLK3-207ENST00000562389 PPP5D1E7EU14 171 aa12.8□□□□□ -0.36
CLK3-207ENST00000562389 K7EIM0 57 aa12.8□□□□□ -0.36
CLK3-207ENST00000562389 GGCTO75223 188 aaKnown RBP12.8□□□□□ -0.36
CLK3-207ENST00000562389 ARL3P36405 182 aa12.8□□□□□ -0.36
CLK3-207ENST00000562389 SNCAP37840 140 aa12.8□□□□□ -0.36
CLK3-207ENST00000562389 C4orf46Q504U0 113 aa12.8□□□□□ -0.36
CLK3-207ENST00000562389 PVRIGQ6DKI7 326 aa12.8□□□□□ -0.36
CLK3-207ENST00000562389 COQ8AQ8NI60 647 aa12.8□□□□□ -0.36
CLK3-207ENST00000562389 HSPB7Q9UBY9 170 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms