RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 COLCA2A8K830 154 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 C9JQL5 133 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 HSPB1P04792 205 aaKnown RBP13.57□□□□□ -0.24
LDLR-206ENST00000557958 HNF4GQ14541 408 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 BSXQ3C1V8 233 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 KHDC3LQ587J8 217 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 ACSM6Q6P461 480 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 CLDND2Q8NHS1 167 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 PIMREGQ9BSJ6 248 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 TAGLN2P37802 199 aaKnown RBP13.57□□□□□ -0.24
LDLR-206ENST00000557958 DLX1P56177 255 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 ZNF726P1Q15940 193 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 HAGHQ16775 308 aa13.57□□□□□ -0.24
LDLR-206ENST00000557958 RPP25LQ8N5L8 163 aaKnown RBP13.57□□□□□ -0.24
LDLR-206ENST00000557958 AKR1D1P51857 326 aa13.56□□□□□ -0.24
LDLR-206ENST00000557958 RAB5BP61020 215 aa13.56□□□□□ -0.24
LDLR-206ENST00000557958 S100A12P80511 92 aa13.56□□□□□ -0.24
LDLR-206ENST00000557958 PMS2P11Q13670 270 aa13.56□□□□□ -0.24
LDLR-206ENST00000557958 CCDC144NLQ6NUI1 221 aa13.56□□□□□ -0.24
LDLR-206ENST00000557958 RBMS3Q6XE24 437 aaKnown RBP13.56□□□□□ -0.24
LDLR-206ENST00000557958 GNG13Q9P2W3 67 aa13.56□□□□□ -0.24
LDLR-206ENST00000557958 ODF3BA8MYP8 253 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 RNASE2P10153 161 aaKnown RBP13.55□□□□□ -0.24
LDLR-206ENST00000557958 RPL35P42766 123 aaKnown RBP13.55□□□□□ -0.24
LDLR-206ENST00000557958 RNF212Q495C1 297 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 ARSJQ5FYB0 599 aaPredicted RBP13.55□□□□□ -0.24
LDLR-206ENST00000557958 SOHLH1Q5JUK2 328 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 CACNG8Q8WXS5 425 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 RARRES2Q99969 163 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 TUBA4BQ9H853 241 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 LSM4Q9Y4Z0 139 aaKnown RBP13.55□□□□□ -0.24
LDLR-206ENST00000557958 DOPEY2Q9Y3R5 2298 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 TET2Q6N021 2002 aaPredicted RBP13.55□□□□□ -0.24
LDLR-206ENST00000557958 A0A1W2PPI3 338 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 OOSP1A8MZH6 123 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 BCL2P10415 239 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 CDC34P49427 236 aaPredicted RBP13.55□□□□□ -0.24
LDLR-206ENST00000557958 PRB3Q04118 309 aaPredicted RBP13.55□□□□□ -0.24
LDLR-206ENST00000557958 PSG5Q15238 335 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 PRSS8Q16651 343 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 VMO1Q7Z5L0 202 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 OR10W1Q8NGF6 305 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 RNASEH2CQ8TDP1 164 aaKnown RBP13.55□□□□□ -0.24
LDLR-206ENST00000557958 C12orf57Q99622 126 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 MGST2Q99735 147 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 GGTLC1Q9BX51 225 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 SLC25A22Q9H936 323 aa13.55□□□□□ -0.24
LDLR-206ENST00000557958 IGHV2-70DA0A0C4DH43 119 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 LOC102723971A0A1B0GUV8 181 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 A0A1W2PPV4 95 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 FOXH1O75593 365 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 IGKV1D-33P01593 117 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 IGKV1-33P01594 117 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 LGALS4P56470 323 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 LCN2P80188 198 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 ICAM4Q14773 271 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 MINOS1Q5TGZ0 78 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 TMEM144Q7Z5S9 345 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 C10orf105Q8TEF2 133 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 METTL1Q9UBP6 276 aaKnown RBP13.54□□□□□ -0.24
LDLR-206ENST00000557958 SIGLEC9Q9Y336 463 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 PXMP4Q9Y6I8 212 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 MINOS1-NBL1R4GNA1 71 aa13.54□□□□□ -0.24
LDLR-206ENST00000557958 IGHV4-30-2A0A087WSY4 118 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 ZFP92A6NM28 416 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 SEC14L6B5MCN3 397 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 TIMM23O14925 209 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 ZFP36P26651 326 aaKnown RBP13.53□□□□□ -0.24
LDLR-206ENST00000557958 GPX4P36969 197 aaPredicted RBP13.53□□□□□ -0.24
LDLR-206ENST00000557958 RPL27AP46776 148 aaKnown RBP13.53□□□□□ -0.24
LDLR-206ENST00000557958 HABP2Q14520 560 aaPredicted RBP13.53□□□□□ -0.24
LDLR-206ENST00000557958 PPP1R27Q86WC6 154 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 RAB24Q969Q5 203 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 LPAR2Q9HBW0 351 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 USP9YO00507 2555 aaPredicted RBP13.53□□□□□ -0.24
LDLR-206ENST00000557958 NDUFS8O00217 210 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 CRYGBP07316 175 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 OR13C7P0DN81 318 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 RPL29P47914 159 aaKnown RBP13.53□□□□□ -0.24
LDLR-206ENST00000557958 FGF8P55075 233 aaPredicted RBP13.53□□□□□ -0.24
LDLR-206ENST00000557958 PLGLAQ15195 96 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 TNXAQ16473 311 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 SSX7Q7RTT5 188 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 HIST1H2BAQ96A08 127 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 SLC35E1Q96K37 410 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 P2RX4Q99571 388 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 MANBALQ9NQG1 85 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 VAX2Q9UIW0 290 aa13.53□□□□□ -0.24
LDLR-206ENST00000557958 VENTXO95231 258 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 MT-ND4LP03901 98 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 MEOX2P50222 304 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 B2MP61769 119 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 CD69Q07108 199 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 KLRD1Q13241 179 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 CLEC12BQ2HXU8 276 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 RITA1Q96K30 269 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 TPSG1Q9NRR2 321 aa13.52□□□□□ -0.25
LDLR-206ENST00000557958 C1orf196B1AJZ1 125 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 SRP19P09132 144 aaKnown RBP13.51□□□□□ -0.25
LDLR-206ENST00000557958 PSMB3P49720 205 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms