RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ERHP84090 104 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 WT1-ASQ06250 92 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 CNPY1Q3B7I2 92 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 ACSM6Q6P461 480 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 OR1P1Q8NH06 330 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 DLX4Q92988 240 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 OR4C12Q96R67 309 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 ENY2Q9NPA8 101 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 AURKAIP1Q9NWT8 199 aaPredicted RBP11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 GAR1Q9NY12 217 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 CORTO00230 105 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 GGCTO75223 188 aaKnown RBP11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 REG1AP05451 166 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 DEFA5Q01523 94 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 SP6Q3SY56 376 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 AARDQ4LEZ3 155 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 TMEM128Q5BJH2 165 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 LGI3Q8N145 548 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 OR52E5Q8NH55 327 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 GLYATL2Q8WU03 294 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 S100ZQ8WXG8 99 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 CCDC32Q9BV29 185 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 BATF3Q9NR55 127 aa11.05□□□□□ -0.64
CCDC88C-207ENST00000554051 A0A0B4J2A0 478 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 IFNA17P01571 189 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 AKR1C4P17516 323 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 ARL3P36405 182 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 KLF5Q13887 457 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 TMEM268Q5VZI3 342 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 TMED4Q7Z7H5 227 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 CENPSQ8N2Z9 138 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 OR2C3Q8N628 320 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 OR10W1Q8NGF6 305 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 OR9G4Q8NGQ1 327 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 TMEM230Q96A57 120 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 SHPKQ9UHJ6 478 aa11.04□□□□□ -0.64
CCDC88C-207ENST00000554051 MEGF8Q7Z7M0 2845 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 BMPR1BO00238 502 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 SCGB2A1O75556 95 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 NDUFB8O95169 186 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 IL7P13232 177 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 SNCAP37840 140 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 HOXA1P49639 335 aaPredicted RBP11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 SUB1P53999 127 aaKnown RBP eCLIP11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 SPSB3Q6PJ21 355 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 SELENOHQ8IZQ5 122 aaKnown RBP11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 MRAPQ8TCY5 172 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 CCDC140Q96MF4 163 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 SIGLEC8Q9NYZ4 499 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 PTTG2Q9NZH5 202 aa11.03□□□□□ -0.64
CCDC88C-207ENST00000554051 CMYA5Q8N3K9 4069 aa11.02□□□□□ -0.64
CCDC88C-207ENST00000554051 A0A0B4J293 547 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 A6NHS1 94 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 DBX1A6NMT0 343 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 LGALS9O00182 355 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 ST8SIA3O43173 380 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 NDUFB6O95139 128 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 VAMP1P23763 118 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 SYNJ2BPP57105 145 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 SPCS3P61009 180 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 TMEM187Q14656 261 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 SLC25A24Q6NUK1 477 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 ZNF502Q8TBZ5 544 aa11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 BSCL2Q96G97 398 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 ZNF256Q9Y2P7 627 aaPredicted RBP11.02□□□□□ -0.65
CCDC88C-207ENST00000554051 MFSD2BA6NFX1 497 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 TRBV12-3P01733 135 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 SULT1A3P0DMM9 295 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 SULT1A4P0DMN0 295 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 CCR6P51684 374 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 KRTAP10-11P60412 298 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 BAK1Q16611 211 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 FAM106AQ4KMX7 169 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 CLEC19AQ6UXS0 136 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 C19orf35Q6ZS72 473 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 NOXA1Q86UR1 476 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 GPHB5Q86YW7 130 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 LRTM2Q8N967 370 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 OR2K2Q8NGT1 345 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 LHFPL5Q8TAF8 219 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 WDR12Q9GZL7 423 aaKnown RBP11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 PALMDQ9NP74 551 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 C21orf62Q9NYP8 219 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 CACNG5Q9UF02 275 aa11.01□□□□□ -0.65
CCDC88C-207ENST00000554051 A8MWP6 167 aa11□□□□□ -0.65
CCDC88C-207ENST00000554051 SLC25A6P12236 298 aa11□□□□□ -0.65
CCDC88C-207ENST00000554051 FCGR2BP31994 310 aaPredicted RBP11□□□□□ -0.65
CCDC88C-207ENST00000554051 SUPT4H1P63272 117 aaKnown RBP11□□□□□ -0.65
CCDC88C-207ENST00000554051 SMCO1Q147U7 214 aa11□□□□□ -0.65
CCDC88C-207ENST00000554051 PLET1Q6UQ28 207 aa11□□□□□ -0.65
CCDC88C-207ENST00000554051 SDHCQ99643 169 aaPredicted RBP11□□□□□ -0.65
CCDC88C-207ENST00000554051 TXN2Q99757 166 aa11□□□□□ -0.65
CCDC88C-207ENST00000554051 DMRT1Q9Y5R6 373 aa11□□□□□ -0.65
CCDC88C-207ENST00000554051 A0A0G2JRQ6 117 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 A0A1B0GU03 582 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 PPP5D1E7EU14 171 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 SFT2D2O95562 160 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 IGLV1-51P01701 117 aa10.99□□□□□ -0.65
CCDC88C-207ENST00000554051 GPR183P32249 361 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms