RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 KLF2Q9Y5W3 355 aaPredicted RBP21.18■□□□□ 0.98
CCDC88C-205ENST00000553403 PXMP4Q9Y6I8 212 aa21.18■□□□□ 0.98
CCDC88C-205ENST00000553403 USP9XQ93008 2570 aaPredicted RBP21.18■□□□□ 0.98
CCDC88C-205ENST00000553403 E7EUB6 86 aa21.18■□□□□ 0.98
CCDC88C-205ENST00000553403 ZFP36P26651 326 aaKnown RBP21.18■□□□□ 0.98
CCDC88C-205ENST00000553403 RBMS3Q6XE24 437 aaKnown RBP21.18■□□□□ 0.98
CCDC88C-205ENST00000553403 MRPL41Q8IXM3 137 aaKnown RBP21.18■□□□□ 0.98
CCDC88C-205ENST00000553403 TPSG1Q9NRR2 321 aa21.18■□□□□ 0.98
CCDC88C-205ENST00000553403 YIF1AO95070 293 aa21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 GPX4P36969 197 aaPredicted RBP21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 CDC34P49427 236 aaPredicted RBP21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 SUB1P53999 127 aaKnown RBP eCLIP21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 TMEM144Q7Z5S9 345 aa21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 CACNG8Q8WXS5 425 aa21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 SPOCK3Q9BQ16 436 aa21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 VAX2Q9UIW0 290 aa21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 SIGLEC9Q9Y336 463 aa21.17■□□□□ 0.98
CCDC88C-205ENST00000553403 A1L4Q6 167 aa21.16■□□□□ 0.98
CCDC88C-205ENST00000553403 ZFP92A6NM28 416 aa21.16■□□□□ 0.98
CCDC88C-205ENST00000553403 TAGLN2P37802 199 aaKnown RBP21.16■□□□□ 0.98
CCDC88C-205ENST00000553403 RPL29P47914 159 aaKnown RBP21.16■□□□□ 0.98
CCDC88C-205ENST00000553403 TMEM249Q2WGJ8 235 aa21.16■□□□□ 0.98
CCDC88C-205ENST00000553403 C10orf55Q5SWW7 151 aa21.16■□□□□ 0.98
CCDC88C-205ENST00000553403 LDLRAD2Q5SZI1 272 aa21.16■□□□□ 0.98
CCDC88C-205ENST00000553403 P2RX4Q99571 388 aa21.16■□□□□ 0.98
CCDC88C-205ENST00000553403 PDLIM4P50479 330 aa21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 PAX2Q02962 417 aa21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 WT1-ASQ06250 92 aa21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 CD69Q07108 199 aa21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 MIC13Q5XKP0 118 aa21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 RNASEH2CQ8TDP1 164 aaKnown RBP21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 NUPL2O15504 423 aaKnown RBP21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 KLRD1Q13241 179 aa21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 HABP2Q14520 560 aaPredicted RBP21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 VMO1Q7Z5L0 202 aa21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 BPESC1Q9GZL8 116 aa21.15■□□□□ 0.98
CCDC88C-205ENST00000553403 USP9YO00507 2555 aaPredicted RBP21.14■□□□□ 0.98
CCDC88C-205ENST00000553403 TIMM23O14925 209 aa21.14■□□□□ 0.97
CCDC88C-205ENST00000553403 NDUFS6O75380 124 aaKnown RBP21.14■□□□□ 0.97
CCDC88C-205ENST00000553403 CNTFRP26992 372 aa21.14■□□□□ 0.97
CCDC88C-205ENST00000553403 RPL27AP46776 148 aaKnown RBP21.14■□□□□ 0.97
CCDC88C-205ENST00000553403 LMO4P61968 165 aa21.14■□□□□ 0.97
CCDC88C-205ENST00000553403 METTL1Q9UBP6 276 aaKnown RBP21.14■□□□□ 0.97
CCDC88C-205ENST00000553403 TNCP24821 2201 aa21.14■□□□□ 0.97
CCDC88C-205ENST00000553403 IGHV2-70DA0A0C4DH43 119 aa21.13■□□□□ 0.97
CCDC88C-205ENST00000553403 ACTL6BO94805 426 aa21.13■□□□□ 0.97
CCDC88C-205ENST00000553403 VENTXO95231 258 aa21.13■□□□□ 0.97
CCDC88C-205ENST00000553403 IGHV4-39P01824 125 aa21.13■□□□□ 0.97
CCDC88C-205ENST00000553403 B2MP61769 119 aa21.13■□□□□ 0.97
CCDC88C-205ENST00000553403 SIRPDQ9H106 197 aa21.13■□□□□ 0.97
CCDC88C-205ENST00000553403 MANBALQ9NQG1 85 aa21.13■□□□□ 0.97
CCDC88C-205ENST00000553403 A0A1W2PPV4 95 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 OOSP1A8MZH6 123 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 TSPAN4O14817 238 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 RNF224P0DH78 156 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 GAMTQ14353 236 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 MINOS1Q5TGZ0 78 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 CYB561D1Q8N8Q1 229 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 CFHR4Q92496 578 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 MINOS1-NBL1R4GNA1 71 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 UTP20O75691 2785 aaKnown RBP21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 EIF3GO75821 320 aaKnown RBP eCLIP21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 COMPP49747 757 aaPredicted RBP21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 PRR20EP86478 221 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 PRR20CP86479 221 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 PRR20DP86480 221 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 PRR20BP86481 221 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 PRR20AP86496 221 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 TNXAQ16473 311 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 GCSAMLQ5JQS6 135 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 PPP1R27Q86WC6 154 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 STPG3Q8N7X2 389 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 SLC45A2Q9UMX9 530 aa21.12■□□□□ 0.97
CCDC88C-205ENST00000553403 HRNRQ86YZ3 2850 aaPredicted RBP21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 CYSRT1A8MQ03 144 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 HMGB3O15347 200 aaKnown RBP21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 FBP1P09467 338 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 HOXB4P17483 251 aaPredicted RBP21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 LCN2P80188 198 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 AWAT1Q58HT5 328 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 PVRIGQ6DKI7 326 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 TMEM88Q6PEY1 159 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 SLC16A13Q7RTY0 426 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 SLC35E3Q7Z769 313 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 ZNF114Q8NC26 417 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 SSMEM1Q8WWF3 244 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 SLC35E1Q96K37 410 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 CCL19Q99731 98 aa21.11■□□□□ 0.97
CCDC88C-205ENST00000553403 SPTAN1Q13813 2472 aaKnown RBP21.1■□□□□ 0.97
CCDC88C-205ENST00000553403 IGLC7A0M8Q6 106 aa21.1■□□□□ 0.97
CCDC88C-205ENST00000553403 M0R036 132 aa21.1■□□□□ 0.97
CCDC88C-205ENST00000553403 PSMB3P49720 205 aa21.1■□□□□ 0.97
CCDC88C-205ENST00000553403 RHEBQ15382 184 aa21.1■□□□□ 0.97
CCDC88C-205ENST00000553403 CCDC144NLQ6NUI1 221 aa21.1■□□□□ 0.97
CCDC88C-205ENST00000553403 CBLN2Q8IUK8 224 aa21.1■□□□□ 0.97
CCDC88C-205ENST00000553403 HILPDAQ9Y5L2 63 aa21.1■□□□□ 0.97
CCDC88C-205ENST00000553403 FOXH1O75593 365 aa21.09■□□□□ 0.97
CCDC88C-205ENST00000553403 LHFPL4Q7Z7J7 247 aa21.09■□□□□ 0.97
CCDC88C-205ENST00000553403 TMPRSS5Q9H3S3 457 aa21.09■□□□□ 0.97
CCDC88C-205ENST00000553403 FBXL15Q9H469 300 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms