RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 TRAV2A0A0B4J234 112 aa10.14□□□□□ -0.79
VPS29-209ENST00000551655 HLA-DQB1P01920 261 aa10.14□□□□□ -0.79
VPS29-209ENST00000551655 C1orf146Q5VVC0 180 aa10.14□□□□□ -0.79
VPS29-209ENST00000551655 DUSP18Q8NEJ0 188 aa10.14□□□□□ -0.79
VPS29-209ENST00000551655 PHYHIPQ92561 330 aa10.14□□□□□ -0.79
VPS29-209ENST00000551655 TMEM80Q96HE8 168 aa10.14□□□□□ -0.79
VPS29-209ENST00000551655 HSD17B10Q99714 261 aaKnown RBP10.14□□□□□ -0.79
VPS29-209ENST00000551655 PLGRKTQ9HBL7 147 aa10.14□□□□□ -0.79
VPS29-209ENST00000551655 ELF5Q9UKW6 265 aaPredicted RBP10.14□□□□□ -0.79
VPS29-209ENST00000551655 OR2W1Q9Y3N9 320 aa10.14□□□□□ -0.79
VPS29-209ENST00000551655 IGHV3OR16-12A0A075B7B8 117 aa10.13□□□□□ -0.79
VPS29-209ENST00000551655 CYB5BO43169 146 aa10.13□□□□□ -0.79
VPS29-209ENST00000551655 LCE2AQ5TA79 106 aaPredicted RBP10.13□□□□□ -0.79
VPS29-209ENST00000551655 ZNF773Q6PK81 442 aa10.13□□□□□ -0.79
VPS29-209ENST00000551655 TOMM20LQ6UXN7 152 aa10.13□□□□□ -0.79
VPS29-209ENST00000551655 PYDC1Q8WXC3 89 aa10.13□□□□□ -0.79
VPS29-209ENST00000551655 RAB3CQ96E17 227 aa10.13□□□□□ -0.79
VPS29-209ENST00000551655 ATP6V0BQ99437 205 aa10.13□□□□□ -0.79
VPS29-209ENST00000551655 SRSF8Q9BRL6 282 aaKnown RBP10.13□□□□□ -0.79
VPS29-209ENST00000551655 HINT2Q9BX68 163 aa10.13□□□□□ -0.79
VPS29-209ENST00000551655 NXF2Q9GZY0 626 aaKnown RBP10.13□□□□□ -0.79
VPS29-209ENST00000551655 TEX50A0A1B0GTY4 177 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 MFNGO00587 321 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 SLC17A2O00624 439 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 TRAPPC2P0DI81 140 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 TRAPPC2BP0DI82 140 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 HAMPP81172 84 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 SPAG16Q8N0X2 631 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 SLC25A46Q96AG3 418 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 RAB40CQ96S21 281 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 TMEM140Q9NV12 185 aa10.12□□□□□ -0.79
VPS29-209ENST00000551655 TMEM272A0A1B0GTI8 110 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 DENRO43583 198 aaKnown RBP10.11□□□□□ -0.79
VPS29-209ENST00000551655 CD1AP06126 327 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 FXYD7P58549 80 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 RAB11BQ15907 218 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 C2orf76Q3KRA6 126 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 HSD17B12Q53GQ0 312 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 ZNF705AQ6ZN79 300 aaPredicted RBP10.11□□□□□ -0.79
VPS29-209ENST00000551655 GRAMD2BQ96HH9 432 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 GINS3Q9BRX5 216 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 ZFAND3Q9H8U3 227 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 AK6Q9Y3D8 172 aaKnown RBP10.11□□□□□ -0.79
VPS29-209ENST00000551655 LINC00588Q9Y4M8 146 aa10.11□□□□□ -0.79
VPS29-209ENST00000551655 IRGMA1A4Y4 181 aa10.1□□□□□ -0.79
VPS29-209ENST00000551655 ZNF705FA8MVS1 300 aaPredicted RBP10.1□□□□□ -0.79
VPS29-209ENST00000551655 CD5P06127 495 aa10.1□□□□□ -0.79
VPS29-209ENST00000551655 ZNF705DP0CH99 300 aaPredicted RBP10.1□□□□□ -0.79
VPS29-209ENST00000551655 ZNF705BP0CI00 300 aaPredicted RBP10.1□□□□□ -0.79
VPS29-209ENST00000551655 ST3GAL4Q11206 333 aa10.1□□□□□ -0.79
VPS29-209ENST00000551655 PSMG4Q5JS54 123 aa10.1□□□□□ -0.79
VPS29-209ENST00000551655 DCANP1Q8TF63 244 aa10.1□□□□□ -0.79
VPS29-209ENST00000551655 FAM3DQ96BQ1 224 aa10.1□□□□□ -0.79
VPS29-209ENST00000551655 MISP3Q96FF7 219 aa10.1□□□□□ -0.79
VPS29-209ENST00000551655 C17orf77Q96MU5 243 aa10.1□□□□□ -0.79
VPS29-209ENST00000551655 RPS10-NUDT3A0A1W2PQS6 291 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 EFCAB10A6NFE3 127 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 I3L2K1 104 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 SULT1C2O00338 296 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 NUDT3O95989 172 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 MFAP4P55083 255 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 Q6ZS49 121 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 C15orf53Q8NAA6 179 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 DMBX1Q8NFW5 382 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 NEU1Q99519 415 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 C1QTNF4Q9BXJ3 329 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 CCL28Q9NRJ3 127 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 NDUFA4L2Q9NRX3 87 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 NSG2Q9Y328 171 aa10.09□□□□□ -0.79
VPS29-209ENST00000551655 PUS1Q9Y606 427 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS29-209ENST00000551655 A0A1B0GU03 582 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 TMEM189A5PLL7 270 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 SLC22A5O76082 557 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 UCHL1P09936 223 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 HIST1H1DP16402 221 aaKnown RBP10.08□□□□□ -0.8
VPS29-209ENST00000551655 BTF3P20290 206 aaKnown RBP10.08□□□□□ -0.8
VPS29-209ENST00000551655 TALDO1P37837 337 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 WNT4P56705 351 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 TAS2R31P59538 309 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 KRTAP10-1P60331 282 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 OR1L8Q8NGR8 309 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 OR10R2Q8NGX6 335 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 LSM10Q969L4 123 aaKnown RBP10.08□□□□□ -0.8
VPS29-209ENST00000551655 DCSTAMPQ9H295 470 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 YTHDF2Q9Y5A9 579 aaKnown RBP10.08□□□□□ -0.8
VPS29-209ENST00000551655 RFNGQ9Y644 331 aa10.08□□□□□ -0.8
VPS29-209ENST00000551655 MYL12BO14950 172 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 GNG7O60262 68 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 MT-CO2P00403 227 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 NQO2P16083 231 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 FGF9P31371 208 aaPredicted RBP10.07□□□□□ -0.8
VPS29-209ENST00000551655 DEFB1P60022 68 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 DAD1P61803 113 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 OXA1LQ15070 435 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 RCN1Q15293 331 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 POU2AF1Q16633 256 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 HES5Q5TA89 166 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 PINX1Q96BK5 328 aaKnown RBP10.07□□□□□ -0.8
VPS29-209ENST00000551655 ZNF503Q96F45 646 aa10.07□□□□□ -0.8
VPS29-209ENST00000551655 RNF213Q63HN8 5207 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms