RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 UPK2O00526 184 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 TNFSF12O43508 249 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 AMBPP02760 352 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 GNAO1P09471 354 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 CALRP27797 417 aaKnown RBP7.57□□□□□ -1.2
VPS29-208ENST00000550267 DEFB131AP59861 70 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 RPS25P62851 125 aaKnown RBP7.57□□□□□ -1.2
VPS29-208ENST00000550267 SPHARQ15513 63 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 SSX1Q16384 188 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 LGALS9BQ3B8N2 356 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 FAM90A2PQ658T7 463 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 ZNF66Q6ZN08 573 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 DHRSXQ8N5I4 330 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 GDPD1Q8N9F7 314 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 SCARB1Q8WTV0 552 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 SRSF8Q9BRL6 282 aaKnown RBP7.57□□□□□ -1.2
VPS29-208ENST00000550267 SCRT1Q9BWW7 348 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 KRTAP3-1Q9BYR8 98 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 COMMD5Q9GZQ3 224 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 V9GY05 133 aa7.57□□□□□ -1.2
VPS29-208ENST00000550267 IGHV3OR16-13A0A075B7E8 117 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 DEFB131BA0A096LNP1 70 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 IGHV3-74A0A0B4J1X5 117 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 CYB5BO43169 146 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 ARL6IP5O75915 188 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 SERPINE2P07093 398 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 GIG44P09565 113 aaPredicted RBP7.56□□□□□ -1.2
VPS29-208ENST00000550267 OR13C7P0DN81 318 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 MIFP14174 115 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 DTYMKP23919 212 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 WT1-ASQ06250 92 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 Q56UQ5 140 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 C8orf59Q8N0T1 100 aaPredicted RBP7.56□□□□□ -1.2
VPS29-208ENST00000550267 SPAG16Q8N0X2 631 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 CENPSQ8N2Z9 138 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 FAM24BQ8N5W8 94 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 MAPKAPK5-AS1Q8N8E1 139 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 UFD1Q92890 307 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 CMTM3Q96MX0 182 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 QTRT1Q9BXR0 403 aaKnown RBP7.56□□□□□ -1.2
VPS29-208ENST00000550267 KRTAP9-8Q9BYQ0 159 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 CELA1Q9UNI1 258 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 X6R8D5 127 aa7.56□□□□□ -1.2
VPS29-208ENST00000550267 K7EIM0 57 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 NUPL2O15504 423 aaKnown RBP7.55□□□□□ -1.2
VPS29-208ENST00000550267 YIF1AO95070 293 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 CTXN2P0C2S0 81 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 PAFAH1B2P68402 229 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 C12orf74Q32Q52 190 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 TCF24Q7RTU0 167 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 STHQ8IWL8 128 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 C10orf67Q8IYJ2 551 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 GIMAP1Q8WWP7 306 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 ATP6V0BQ99437 205 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 AIFM2Q9BRQ8 373 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 NDUFAF3Q9BU61 184 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 CCL28Q9NRJ3 127 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 TMEM140Q9NV12 185 aa7.55□□□□□ -1.2
VPS29-208ENST00000550267 F11RQ9Y624 299 aaKnown RBP7.55□□□□□ -1.2
VPS29-208ENST00000550267 TEX50A0A1B0GTY4 177 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 ZNF705EA8MWA4 302 aaPredicted RBP7.54□□□□□ -1.2
VPS29-208ENST00000550267 PTGES3LE9PB15 166 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 SULT1C2O00338 296 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 IFNA10P01566 189 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 CTSGP08311 255 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 TRAPPC2P0DI81 140 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 TRAPPC2BP0DI82 140 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 C4BPBP20851 252 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 RANBP1P43487 201 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 OR10A3P58181 314 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 TAS2R31P59538 309 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 FABP5Q01469 135 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 POU2AF1Q16633 256 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 CDNFQ49AH0 187 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 CNIH2Q6PI25 160 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 Q6ZR54 194 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 NUDCD2Q8WVJ2 157 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 SECTM1Q8WVN6 248 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 OR10C1Q96KK4 312 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 HINT2Q9BX68 163 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 ATG5Q9H1Y0 275 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 MS4A6AQ9H2W1 248 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 CLEC5AQ9NY25 188 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 LRP1BQ9NZR2 4599 aa7.54□□□□□ -1.2
VPS29-208ENST00000550267 TRAV14DV4A0A0A6YYC5 116 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 IGHV3-66A0A0C4DH42 116 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 METTL21EPA6NDL7 271 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 ERICH4A6NGS2 130 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 DNASE2O00115 360 aaPredicted RBP7.53□□□□□ -1.2
VPS29-208ENST00000550267 ST8SIA3O43173 380 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 RBFOX2O43251 390 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS29-208ENST00000550267 DFFBO76075 338 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 HPRT1P00492 218 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 APOHP02749 345 aaPredicted RBP7.53□□□□□ -1.2
VPS29-208ENST00000550267 HSMCR30P0CW71 290 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 NQO2P16083 231 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 RELQ04864 619 aaPredicted RBP7.53□□□□□ -1.2
VPS29-208ENST00000550267 THOC7Q6I9Y2 204 aaKnown RBP7.53□□□□□ -1.2
VPS29-208ENST00000550267 ZNF773Q6PK81 442 aa7.53□□□□□ -1.2
VPS29-208ENST00000550267 TRPT1Q86TN4 253 aaKnown RBP7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms