RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 HABP2Q14520 560 aaPredicted RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 SSX2Q16385 188 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 GUK1Q16774 197 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 ACOT6Q3I5F7 207 aaPredicted RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 KHDC3LQ587J8 217 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 AVPI1Q5T686 147 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 SP5Q6BEB4 398 aaPredicted RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 ETFRF1Q6IPR1 90 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 CLEC9AQ6UXN8 241 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 RBMS3Q6XE24 437 aaKnown RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 ZNF114Q8NC26 417 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 OR4P4Q8NGL7 312 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 OR1L6Q8NGR2 347 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 RNASEH2CQ8TDP1 164 aaKnown RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 NARS2Q96I59 477 aaKnown RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 LINC00052Q96N35 136 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 P2RX4Q99571 388 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 TXNDC17Q9BRA2 123 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 NPCDR1Q9BY65 106 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 ACTR3CQ9C0K3 210 aaPredicted RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 TMPRSS5Q9H3S3 457 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 ONECUT1Q9UBC0 465 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 TBL2Q9Y4P3 447 aaKnown RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 TACC2O95359 2948 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 ANKRD17O75179 2603 aaKnown RBP5□□□□□ -1.61
SYNE1-239ENST00000545694 DCHS2Q6V1P9 2916 aa5□□□□□ -1.61
SYNE1-239ENST00000545694 ABCA1O95477 2261 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 CTXND1A0A1B0GTU2 59 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 A0A1W2PPR1 153 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 RBFOX3A6NFN3 312 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 SRRM4A7MD48 611 aaKnown RBP4.99□□□□□ -1.61
SYNE1-239ENST00000545694 SEC14L6B5MCN3 397 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 C22orf46C9J442 243 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 PRSS46E5RG02 174 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 C19orf84I3L1E1 186 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 MT-CO2P00403 227 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 IGLV2-23P01705 113 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 APOC3P02656 99 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 FGF7P21781 194 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 RPL29P47914 159 aaKnown RBP4.99□□□□□ -1.61
SYNE1-239ENST00000545694 ZNF506Q5JVG8 444 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 TEPPQ6URK8 271 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 TMEM144Q7Z5S9 345 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 VKORC1L1Q8N0U8 176 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 PNKDQ8N490 385 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 Q8N7P7 452 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 NANPQ8TBE9 248 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 SFT2D1Q8WV19 159 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 SLC35E1Q96K37 410 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 RNF2Q99496 336 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 PIMREGQ9BSJ6 248 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 EIF5A2Q9GZV4 153 aaKnown RBP4.99□□□□□ -1.61
SYNE1-239ENST00000545694 SLC35B3Q9H1N7 401 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 LPAR2Q9HBW0 351 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 MANBALQ9NQG1 85 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 RPRMQ9NS64 109 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 SLC39A9Q9NUM3 307 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 PLA2G2DQ9UNK4 145 aa4.99□□□□□ -1.61
SYNE1-239ENST00000545694 LSM4Q9Y4Z0 139 aaKnown RBP4.99□□□□□ -1.61
SYNE1-239ENST00000545694 TRAV3A0A0B4J244 114 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 IGHV2-70DA0A0C4DH43 119 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 SMCO3A2RU48 225 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 CRYGBP07316 175 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 SNRNP70P08621 437 aaKnown RBP4.98□□□□□ -1.61
SYNE1-239ENST00000545694 CDKN1AP38936 164 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 PSMB3P49720 205 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 UBE2E1P51965 193 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 LGALS4P56470 323 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 ARF6P62330 175 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 SELENOTP62341 195 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 RUNX1Q01196 453 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 EBI3Q14213 229 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 PRSS8Q16651 343 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 FFAR4Q5NUL3 377 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 UTF1Q5T230 341 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 TPTE2P1Q5T6R2 138 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 PVRIGQ6DKI7 326 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 SPSB3Q6PJ21 355 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 CLEC2AQ6UVW9 174 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 MOB3BQ86TA1 216 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 PPP1R27Q86WC6 154 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 OR2T10Q8NGZ9 312 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 C22orf15Q8WYQ4 148 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 TMEM190Q8WZ59 177 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 MALSU1Q96EH3 234 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 RCC1LQ96I51 464 aaKnown RBP4.98□□□□□ -1.61
SYNE1-239ENST00000545694 CCL19Q99731 98 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 RSG1Q9BU20 258 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 SCRT1Q9BWW7 348 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 NKX6-2Q9C056 277 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-239ENST00000545694 C1RLQ9NZP8 487 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 ARL2-SNX15V9GYD0 113 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 COL12A1Q99715 3063 aa4.98□□□□□ -1.61
SYNE1-239ENST00000545694 A0A1W2PPI3 338 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 MAP1LC3B2A6NCE7 125 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 FAM157AC9JC47 383 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 TMEM250H0YL14 139 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 RRHO14718 337 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 SLC25A17O43808 307 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 NDUFA3O95167 84 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms