RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 KLK15Q9H2R5 256 aa13.37□□□□□ -0.27
LIG1-204ENST00000542460 TCRBV4S1A1TA0A5B7 111 aa13.36□□□□□ -0.27
LIG1-204ENST00000542460 DEFA4P12838 97 aa13.36□□□□□ -0.27
LIG1-204ENST00000542460 C2orf68Q2NKX9 166 aa13.36□□□□□ -0.27
LIG1-204ENST00000542460 OR2C3Q8N628 320 aa13.36□□□□□ -0.27
LIG1-204ENST00000542460 ZBTB8BQ8NAP8 495 aaPredicted RBP13.36□□□□□ -0.27
LIG1-204ENST00000542460 MS4A10Q96PG2 267 aa13.36□□□□□ -0.27
LIG1-204ENST00000542460 GSKIPQ9P0R6 139 aa13.36□□□□□ -0.27
LIG1-204ENST00000542460 TENM1Q9UKZ4 2725 aa13.36□□□□□ -0.27
LIG1-204ENST00000542460 RPLP1P05386 114 aaKnown RBP13.35□□□□□ -0.27
LIG1-204ENST00000542460 ID3Q02535 119 aa13.35□□□□□ -0.27
LIG1-204ENST00000542460 SHISA2Q6UWI4 295 aa13.35□□□□□ -0.27
LIG1-204ENST00000542460 LCNL1Q6ZST4 164 aa13.35□□□□□ -0.27
LIG1-204ENST00000542460 OR4D5Q8NGN0 318 aa13.35□□□□□ -0.27
LIG1-204ENST00000542460 C2orf50Q96LR7 162 aa13.35□□□□□ -0.27
LIG1-204ENST00000542460 CITED2Q99967 270 aaPredicted RBP13.35□□□□□ -0.27
LIG1-204ENST00000542460 HIPK2Q9H2X6 1198 aa13.35□□□□□ -0.27
LIG1-204ENST00000542460 RBKSQ9H477 322 aa13.35□□□□□ -0.27
LIG1-204ENST00000542460 HEYLQ9NQ87 328 aaPredicted RBP13.35□□□□□ -0.27
LIG1-204ENST00000542460 ZFP57Q9NU63 452 aa13.35□□□□□ -0.27
LIG1-204ENST00000542460 GOSR2O14653 212 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 CYB5BO43169 146 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 MED6O75586 246 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 PRH1P02810 166 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 TRGV3P03979 118 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 SNCAP37840 140 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 NKX2-1P43699 371 aaPredicted RBP13.34□□□□□ -0.27
LIG1-204ENST00000542460 TPPP2P59282 170 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 KLK9Q2XQG4 91 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 C19orf35Q6ZS72 473 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 ZNF114Q8NC26 417 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 OR1L6Q8NGR2 347 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 DTD1Q8TEA8 209 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 KLK9Q9UKQ9 250 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 TSSC4Q9Y5U2 329 aaPredicted RBP13.34□□□□□ -0.27
LIG1-204ENST00000542460 F11RQ9Y624 299 aaKnown RBP13.34□□□□□ -0.27
LIG1-204ENST00000542460 TRBV9A0A0B4J1U6 114 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 HIST1H1BP16401 226 aaKnown RBP13.34□□□□□ -0.27
LIG1-204ENST00000542460 OR1P1Q8NH06 330 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 MYOZ3Q8TDC0 251 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 FANCD2OSQ96PS1 177 aa13.34□□□□□ -0.27
LIG1-204ENST00000542460 SYNGR2O43760 224 aa13.33□□□□□ -0.28
LIG1-204ENST00000542460 CDX1P47902 265 aaPredicted RBP13.33□□□□□ -0.28
LIG1-204ENST00000542460 SUB1P53999 127 aaKnown RBP eCLIP13.33□□□□□ -0.28
LIG1-204ENST00000542460 KIAA0141Q14154 515 aaPredicted RBP13.33□□□□□ -0.28
LIG1-204ENST00000542460 KHDC1LQ5JSQ8 128 aa13.33□□□□□ -0.28
LIG1-204ENST00000542460 ZNF491Q8N8L2 437 aa13.33□□□□□ -0.28
LIG1-204ENST00000542460 NECAP1Q8NC96 275 aa13.33□□□□□ -0.28
LIG1-204ENST00000542460 UBE2E2Q96LR5 201 aa13.33□□□□□ -0.28
LIG1-204ENST00000542460 P2RX4Q99571 388 aa13.33□□□□□ -0.28
LIG1-204ENST00000542460 MAGT1Q9H0U3 335 aa13.33□□□□□ -0.28
LIG1-204ENST00000542460 MED28Q9H204 178 aa13.33□□□□□ -0.28
LIG1-204ENST00000542460 IGLV11-55A0A075B6I3 123 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 A0A0G2JLM5 398 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 FAM223BA6NKX1 122 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 WRBO00258 174 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 SIX6O95475 246 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 LY86O95711 162 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 HTR2BP41595 481 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 RPL23AP62750 156 aaKnown RBP13.32□□□□□ -0.28
LIG1-204ENST00000542460 RHOGP84095 191 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 HIST2H2BDQ6DRA6 164 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 SLC25A24Q6NUK1 477 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 NDUFA11Q86Y39 141 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 FAM223AQ8IWN6 122 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 USMG5Q96IX5 58 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 CIB3Q96Q77 187 aaPredicted RBP13.32□□□□□ -0.28
LIG1-204ENST00000542460 THYN1Q9P016 225 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 MGAT4CQ9UBM8 478 aa13.32□□□□□ -0.28
LIG1-204ENST00000542460 TET2Q6N021 2002 aaPredicted RBP13.32□□□□□ -0.28
LIG1-204ENST00000542460 OR2J3O76001 311 aa13.31□□□□□ -0.28
LIG1-204ENST00000542460 SCGB1D2O95969 90 aa13.31□□□□□ -0.28
LIG1-204ENST00000542460 POLR2GP62487 172 aaKnown RBP eCLIP13.31□□□□□ -0.28
LIG1-204ENST00000542460 CYCSP99999 105 aaKnown RBP13.31□□□□□ -0.28
LIG1-204ENST00000542460 IL15RAQ13261 267 aa13.31□□□□□ -0.28
LIG1-204ENST00000542460 BSXQ3C1V8 233 aa13.31□□□□□ -0.28
LIG1-204ENST00000542460 NMES1Q9C002 83 aa13.31□□□□□ -0.28
LIG1-204ENST00000542460 DMRT1Q9Y5R6 373 aa13.31□□□□□ -0.28
LIG1-204ENST00000542460 U3KQ87 197 aa13.31□□□□□ -0.28
LIG1-204ENST00000542460 MBPP02686 304 aaPredicted RBP13.3□□□□□ -0.28
LIG1-204ENST00000542460 RNASE2P10153 161 aaKnown RBP13.3□□□□□ -0.28
LIG1-204ENST00000542460 BCAP31P51572 246 aa13.3□□□□□ -0.28
LIG1-204ENST00000542460 MFAP2P55001 183 aa13.3□□□□□ -0.28
LIG1-204ENST00000542460 H2BFSP57053 126 aa13.3□□□□□ -0.28
LIG1-204ENST00000542460 ATP5G2Q06055 141 aa13.3□□□□□ -0.28
LIG1-204ENST00000542460 SLC24A4Q8NFF2 622 aa13.3□□□□□ -0.28
LIG1-204ENST00000542460 FBXL7Q9UJT9 491 aa13.3□□□□□ -0.28
LIG1-204ENST00000542460 NDUFB8O95169 186 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 IFNA10P01566 189 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 IAPPP10997 89 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 ATP5IP56385 69 aaPredicted RBP13.29□□□□□ -0.28
LIG1-204ENST00000542460 C15orf32Q32M92 178 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 C2orf83Q53S99 150 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 PVRIGQ6DKI7 326 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 NOXA1Q86UR1 476 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 A0A1W2PRX2 142 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 ADARB2-AS1A8MUL3 147 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 NUDT19A8MXV4 375 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 SSSCA1O60232 199 aa13.29□□□□□ -0.28
LIG1-204ENST00000542460 CXCL3P19876 107 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms