RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 RPH3ALQ9UNE2 315 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 USF3Q68DE3 2245 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 SAA2-SAA4A0A096LPE2 208 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 NKX6-3A6NJ46 265 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 HPRT1P00492 218 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 RPLP1P05386 114 aaKnown RBP8.79□□□□□ -1
CLIP1-210ENST00000538120 SAA2P0DJI9 122 aaPredicted RBP8.79□□□□□ -1
CLIP1-210ENST00000538120 LOXP28300 417 aaPredicted RBP8.79□□□□□ -1
CLIP1-210ENST00000538120 GALR1P47211 349 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 RAB7AP51149 207 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 BSXQ3C1V8 233 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 CYP2G1PQ6ZSU1 146 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 PARLQ9H300 379 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 RAB9BQ9NP90 201 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 DYNLRB1Q9NP97 96 aa8.79□□□□□ -1
CLIP1-210ENST00000538120 RPUSD1Q9UJJ7 312 aaKnown RBP8.79□□□□□ -1
CLIP1-210ENST00000538120 hADV38S2A0JD32 116 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 DVL1O14640 695 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 RBFOX2O43251 390 aaKnown RBP eCLIP8.78□□□□□ -1
CLIP1-210ENST00000538120 TGOLN2O43493 480 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 HNF1AP20823 631 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 GNB2P62879 340 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 HBG1P69891 147 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 HBG2P69892 147 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 SLC38A11Q08AI6 406 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 PYGO2Q9BRQ0 406 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 CTSZQ9UBR2 303 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 FUT9Q9Y231 359 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 LINC00312Q9Y6C7 94 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 DSCAML1Q8TD84 2053 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 PMS2P5A8MQ11 134 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 ZG16O60844 167 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 KBTBD11O94819 623 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 IFNA10P01566 189 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 FGF7P21781 194 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 MEF2CQ06413 473 aaPredicted RBP8.78□□□□□ -1
CLIP1-210ENST00000538120 LY6DQ14210 128 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 TMEM200BQ69YZ2 307 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.78□□□□□ -1
CLIP1-210ENST00000538120 WFDC12Q8WWY7 111 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 PIMREGQ9BSJ6 248 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 QTRT1Q9BXR0 403 aaKnown RBP8.78□□□□□ -1
CLIP1-210ENST00000538120 GSX1Q9H4S2 264 aaPredicted RBP8.78□□□□□ -1
CLIP1-210ENST00000538120 AURKAIP1Q9NWT8 199 aaPredicted RBP8.78□□□□□ -1
CLIP1-210ENST00000538120 ZNRD1Q9P1U0 126 aa8.78□□□□□ -1
CLIP1-210ENST00000538120 ROS1P08922 2347 aa8.77□□□□□ -1
CLIP1-210ENST00000538120 PPP5D1E7EU14 171 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 H7BYZ3 331 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 MRPS11P82912 194 aaKnown RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 USF2Q15853 346 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 SPINK9Q5DT21 86 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 SLC25A48Q6ZT89 311 aaKnown RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 TGIF2LXQ8IUE1 241 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 VKORC1L1Q8N0U8 176 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 OR4F5Q8NH21 305 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 RNASEH2CQ8TDP1 164 aaKnown RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 NEIL1Q96FI4 390 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 OR4F4Q96R69 305 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 S1PR3Q99500 378 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 RELNP78509 3460 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 TRAV3A0A0B4J244 114 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 IFNA1P01562 189 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 CCL3L1P16619 93 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 RPL31P62899 125 aaKnown RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM30BQ3MIR4 351 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 LYG1Q8N1E2 194 aa8.77□□□□□ -1.01
CLIP1-210ENST00000538120 ZCCHC14Q8WYQ9 949 aaKnown RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 PINX1Q96BK5 328 aaKnown RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 ACTR3CQ9C0K3 210 aaPredicted RBP8.77□□□□□ -1.01
CLIP1-210ENST00000538120 IGHV1-69-2A0A0G2JMI3 117 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 A0A1B0GUS0 222 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 FAM90A9PA6NNJ1 464 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 DLL1O00548 723 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 KIR2DS2P43631 304 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 FAM3BP58499 235 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-210ENST00000538120 TFF3Q07654 80 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 ZNF672Q499Z4 452 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-210ENST00000538120 RAB24Q969Q5 203 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 C2orf88Q9BSF0 95 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM204Q9BSN7 226 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 NPPCP23582 126 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 ATRXP46100 2492 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 CDC34P49427 236 aaPredicted RBP8.76□□□□□ -1.01
CLIP1-210ENST00000538120 THBS3P49746 956 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 OR10G9Q8NGN4 311 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 OR10G7Q8NGN6 311 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 OR5B12Q96R08 314 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 ATG101Q9BSB4 218 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 KAAG1Q9UBP8 84 aa8.76□□□□□ -1.01
CLIP1-210ENST00000538120 TANC2Q9HCD6 1990 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 C22orf46C9J442 243 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 NDUFB3O43676 98 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 PAGE4O60829 102 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 HRASP01112 189 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 CT45A6P0DMU7 189 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 CT45A5P0DMU8 189 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 CT45A7P0DMV0 189 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 PSMB3P49720 205 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 COA6Q5JTJ3 125 aaKnown RBP8.75□□□□□ -1.01
CLIP1-210ENST00000538120 CENPVQ7Z7K6 275 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms