RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 NAPSAO96009 420 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 LYNX1P0DP58 116 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 GCHFRP30047 84 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 LGALS7P47929 136 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 ATOH7Q8N100 152 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 MUC15Q8N387 334 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 C1orf147Q96MC9 270 aaPredicted RBP9.8□□□□□ -0.84
SYNPO-204ENST00000519664 GUCD1Q96NT3 240 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 DMRTA2Q96SC8 542 aa9.8□□□□□ -0.84
SYNPO-204ENST00000519664 MRPL18Q9H0U6 180 aaKnown RBP9.8□□□□□ -0.84
SYNPO-204ENST00000519664 SCO2A0A1W2PP80 73 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 IL6RP08887 468 aaPredicted RBP9.79□□□□□ -0.84
SYNPO-204ENST00000519664 C8orf88P0DMB2 117 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 HIST1H1EP10412 219 aaKnown RBP9.79□□□□□ -0.84
SYNPO-204ENST00000519664 GFI1BQ5VTD9 330 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 IQCF6A8MYZ5 107 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 IFNL4K9M1U5 179 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 ZNF497Q6ZNH5 498 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 MRPS18CQ9Y3D5 142 aaKnown RBP9.79□□□□□ -0.84
SYNPO-204ENST00000519664 TMEM250H0YL14 139 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 F2RL2O00254 374 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 HTN1P15515 57 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 RPL30P62888 115 aaKnown RBP9.79□□□□□ -0.84
SYNPO-204ENST00000519664 MMD2Q8IY49 270 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 C1orf174Q8IYL3 243 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 OR4C13Q8NGP0 309 aa9.79□□□□□ -0.84
SYNPO-204ENST00000519664 PPIAL4CA0A0B4J2A2 164 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 A0A0G2JRQ6 117 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 C9JQL5 133 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 PPIAL4GP0DN37 164 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 GPR6P46095 362 aaPredicted RBP9.78□□□□□ -0.84
SYNPO-204ENST00000519664 BSPH1Q075Z2 132 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 RNFT1Q5M7Z0 435 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 ASCL5Q7RTU5 278 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 LIME1Q9H400 295 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 HIGD1AQ9Y241 93 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 FRMPD3Q5JV73 1810 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 PLXNB3Q9ULL4 1909 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 IGKV3D-15A0A087WSY6 115 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 GAGE10A6NGK3 116 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 CD24P25063 80 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 CENPWQ5EE01 88 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 ZCCHC14Q8WYQ9 949 aaKnown RBP9.78□□□□□ -0.84
SYNPO-204ENST00000519664 YTHDF2Q9Y5A9 579 aaKnown RBP9.78□□□□□ -0.84
SYNPO-204ENST00000519664 PIEZO1Q92508 2521 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 F5H697 171 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 SRIP30626 198 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 FCGR2BP31994 310 aaPredicted RBP9.78□□□□□ -0.84
SYNPO-204ENST00000519664 MC5RP33032 325 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 FOXA3P55318 350 aaPredicted RBP9.78□□□□□ -0.84
SYNPO-204ENST00000519664 PMCHL1Q16048 86 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 RSPO1Q2MKA7 263 aaPredicted RBP9.78□□□□□ -0.84
SYNPO-204ENST00000519664 FAM53AQ6NSI3 398 aaPredicted RBP9.78□□□□□ -0.84
SYNPO-204ENST00000519664 Q6ZRM9 215 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 PNKDQ8N490 385 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 SPSB4Q96A44 273 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 SFRP2Q96HF1 295 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 TMEM191AQ9H0A3 160 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 ZNF430Q9H8G1 570 aaPredicted RBP9.78□□□□□ -0.84
SYNPO-204ENST00000519664 GP6Q9HCN6 339 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 A0A1B0GV72 72 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 J3QW42 95 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 PRSS1P07477 247 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 CSRP2Q16527 193 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 LHFPL4Q7Z7J7 247 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 STXBP6Q8NFX7 210 aa9.78□□□□□ -0.84
SYNPO-204ENST00000519664 MYO9AB2RTY4 2548 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 WIPF3A6NGB9 483 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 A6NNC1 897 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 A8MWP6 167 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 DLL1O00548 723 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 GOSR1O95249 250 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 IGHV2-5P01817 119 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 CYP2G1PQ6ZSU1 146 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 SDF2L1Q9HCN8 221 aa9.77□□□□□ -0.84
SYNPO-204ENST00000519664 CCDC168Q8NDH2 2452 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 IGHV1-69-2A0A0G2JMI3 117 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 C1QTNF9P0C862 333 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 C12orf54Q6X4T0 127 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 OR8A1Q8NGG7 326 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 PGLYRP4Q96LB8 373 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 NEU1Q99519 415 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 FBXL15Q9H469 300 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 OTOGLQ3ZCN5 2332 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 KBTBD11-OT1A0A1B0GTJ5 212 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 IGKV1-5P01602 117 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 MIR17HGQ75NE6 70 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 WFDC3Q8IUB2 231 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 OR9G1Q8NH87 305 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 SFXN3Q9BWM7 321 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 PROK2Q9HC23 129 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 ARHGAP21Q5T5U3 1957 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 IGHV3OR16-10A0A075B7F0 116 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 SAA2-SAA4A0A096LPE2 208 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 OR9G9P0C7N8 305 aa9.77□□□□□ -0.85
SYNPO-204ENST00000519664 SAA2P0DJI9 122 aaPredicted RBP9.77□□□□□ -0.85
SYNPO-204ENST00000519664 MRPL20Q9BYC9 149 aaKnown RBP9.77□□□□□ -0.85
SYNPO-204ENST00000519664 IGHV1-18A0A0C4DH31 117 aa9.76□□□□□ -0.85
SYNPO-204ENST00000519664 LY6G6EA0A0G2JKS1 128 aa9.76□□□□□ -0.85
SYNPO-204ENST00000519664 A6NDN8 102 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 166.4 ms