RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 C2orf15Q8WU43 125 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RAB2BQ8WUD1 216 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 KLK6Q92876 244 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HIST1H2BAQ96A08 127 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MAGOHBQ96A72 148 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC25A46Q96AG3 418 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLAMF6Q96DU3 332 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 BORCS8Q96FH0 119 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 NARS2Q96I59 477 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGF2BP2-AS1Q96M15 143 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MCEEQ96PE7 176 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 YPEL2Q96QA6 119 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PEBP4Q96S96 227 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C12orf57Q99622 126 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MGLLQ99685 303 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SOSTQ9BQB4 213 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SLC25A21Q9BQT8 299 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 LXNQ9BS40 222 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HDHD3Q9BSH5 251 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SHANK2-AS3Q9BTD1 123 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PDCD10Q9BUL8 212 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MND1Q9BWT6 205 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 DEFB126Q9BYW3 111 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR2H1Q9GZK4 316 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 YIPF3Q9GZM5 350 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR8D2Q9GZM6 311 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 AICDAQ9GZX7 198 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR2D2Q9H210 308 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C11orf68Q9H3H3 251 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TCEAL2Q9H3H9 227 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TUBA4BQ9H853 241 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 EFCAB1Q9HAE3 211 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CXorf21Q9HAI6 301 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF286AQ9HBT8 521 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 POPDC3Q9HBV1 291 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SND1-IT1Q9HBX3 110 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MRPL16Q9NX20 251 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ANAPC11Q9NYG5 84 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IL36BQ9NZH7 164 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MED11Q9P086 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNRD1Q9P1U0 126 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CKLFQ9UBR5 152 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPUSD1Q9UJJ7 312 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PCTPQ9UKL6 214 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ERG28Q9UKR5 140 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAPPC2LQ9UL33 140 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 FUT9Q9Y231 359 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CYSLTR1Q9Y271 337 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HS3ST2Q9Y278 367 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 COQ4Q9Y3A0 265 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 AMMECR1Q9Y4X0 333 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RBM7Q9Y580 266 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HEY1Q9Y5J3 304 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PHLDA3Q9Y5J5 127 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAPPC1Q9Y5R8 145 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF706Q9Y5V0 76 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PRDM2Q13029 1718 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TNKS1BP1Q9C0C2 1729 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM2Q9UHN6 1383 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SPEF2Q9C093 1822 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SYNJ1O43426 1573 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 KDM5CP41229 1560 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ADAMTSL1Q8N6G6 1762 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 YLPM1P49750 1951 aaKnown RBP0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF609O15014 1411 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 TROQ12816 1431 aaPredicted RBP0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 KIAA1107Q9UPP5 1409 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 AGRNO00468 2067 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 MAPKBP1O60336 1514 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 HECW1Q76N89 1606 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 PHLPP1O60346 1717 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 XIRP1Q702N8 1843 aaKnown RBP0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 ATAD5Q96QE3 1844 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 RAI1Q7Z5J4 1906 aaPredicted RBP0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 BAZ2AQ9UIF9 1905 aaKnown RBP0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 MTCL1Q9Y4B5 1905 aaKnown RBP0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLV2-33A0A075B6J2 118 aaPredicted RBP0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLV3-16A0A075B6K0 115 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRBV24-1A0A075B6N3 115 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A087X0T9 212 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRGV10A0A0A0MS01 117 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1D-43A0A0B4J1Z2 117 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAV41A0A0B4J266 112 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV1-58A0A0C4DH39 117 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 LOC107984640A0A0U1RRK4 108 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 PVALEFA0A1B0GWK0 134 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 DHRS12A0PJE2 317 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM223A0PJW6 202 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 C20orf202A1L168 122 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 PINLYPA6NC86 204 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 A6NDX4 124 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 GGT3PA6NGU5 568 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 BBIP1A8MTZ0 92 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 A8MWP6 167 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 GGTLC3B5MD39 225 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 C9JAW5 83 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 CLDN25C9JDP6 229 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 F6UZH7 168 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 LY6LH3BQJ8 138 aa0.39□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMX2-CTNND1H3BSU7 103 aa0.39□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms