RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 GNMTQ14749 295 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 Q3ZCU0 254 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 RNF212Q495C1 297 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 MORN2Q502X0 79 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 CT45A1Q5HYN5 189 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 SLC25A48Q6ZT89 311 aaKnown RBP2.68□□□□□ -1.98
NUP54-212ENST00000513248 MOB1BQ7L9L4 216 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 PRSS48Q7RTY5 328 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 LINC00311Q8N616 119 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 COMMD1Q8N668 190 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 C5orf56Q8N8D9 126 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 TMEM104Q8NE00 496 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 OR8H1Q8NGG4 311 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 OR56B1Q8NGI3 324 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 CT45A3Q8NHU0 189 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 MRPL30Q8TCC3 161 aaKnown RBP2.68□□□□□ -1.98
NUP54-212ENST00000513248 GTSF1Q8WW33 167 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 RTN4IP1Q8WWV3 396 aaPredicted RBP2.68□□□□□ -1.98
NUP54-212ENST00000513248 FAM3DQ96BQ1 224 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 RAB3CQ96E17 227 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 NOL4LQ96MY1 436 aaPredicted RBP2.68□□□□□ -1.98
NUP54-212ENST00000513248 SULT4A1Q9BR01 284 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 GINS4Q9BRT9 223 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 MRPL20Q9BYC9 149 aaKnown RBP2.68□□□□□ -1.98
NUP54-212ENST00000513248 ATG5Q9H1Y0 275 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 ISYNA1Q9NPH2 558 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 ACOT13Q9NPJ3 140 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 ZNF355PQ9NSJ1 428 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 NECAP2Q9NVZ3 263 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 FKBP14Q9NWM8 211 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 PIPOXQ9P0Z9 390 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 MBD2Q9UBB5 411 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 ZMAT5Q9UDW3 170 aaKnown RBP2.68□□□□□ -1.98
NUP54-212ENST00000513248 Q9UF83 564 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 AK3Q9UIJ7 227 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 JPT1Q9UK76 154 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 SSR3Q9UNL2 185 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 KIF25-AS1Q9Y6Z4 181 aa2.68□□□□□ -1.98
NUP54-212ENST00000513248 RYR1P21817 5038 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 TRAV9-2A0A087WT02 112 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ZNF736B4DX44 427 aaPredicted RBP2.67□□□□□ -1.98
NUP54-212ENST00000513248 TRDCB7Z8K6 153 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 RAB29O14966 203 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 SLC22A1O15245 554 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 NBR2O15453 112 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 SOCS1O15524 211 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 LANCL1O43813 399 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 YPEL1O60688 119 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 CNIH1O95406 144 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ATP6V1G2O95670 118 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 SNRPCP09234 159 aaKnown RBP2.67□□□□□ -1.98
NUP54-212ENST00000513248 CGB3P0DN86 165 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 CGB7P0DN87 165 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 RAB3BP20337 219 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ACTBP60709 375 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 RPL23AP62750 156 aaKnown RBP2.67□□□□□ -1.98
NUP54-212ENST00000513248 HLA-DRB3P79483 266 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 HTD2P86397 168 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 FABP5Q01469 135 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 PAX5Q02548 391 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 TMEM267Q0VDI3 215 aaPredicted RBP2.67□□□□□ -1.98
NUP54-212ENST00000513248 TPBGQ13641 420 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 KIR2DS1Q14954 304 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 C1orf100Q5SVJ3 147 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 C22orf42Q6IC83 251 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 LAIR2Q6ISS4 152 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 C10orf99Q6UWK7 81 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ADAMTSL5Q6ZMM2 481 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 KRTAP5-5Q701N2 237 aaPredicted RBP2.67□□□□□ -1.98
NUP54-212ENST00000513248 OR2W3Q7Z3T1 314 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ZNF695Q8IW36 515 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 STPG2Q8N412 459 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 C8orf31Q8N9H6 132 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 Q8N9W7 124 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 OR10J5Q8NHC4 309 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ARHGAP5-AS1Q96IT6 56 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ABHD14BQ96IU4 210 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 YPEL2Q96QA6 119 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 OR5B12Q96R08 314 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 CLCC1Q96S66 551 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 TSNAXQ99598 290 aaKnown RBP2.67□□□□□ -1.98
NUP54-212ENST00000513248 PHB2Q99623 299 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 NICN1Q9BSH3 213 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 HDHD3Q9BSH5 251 aaPredicted RBP2.67□□□□□ -1.98
NUP54-212ENST00000513248 DCUN1D5Q9BTE7 237 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 TM2D1Q9BX74 207 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 PECRQ9BY49 303 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ANKRD60Q9BZ19 345 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 ABCG5Q9H222 651 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 DUSP21Q9H596 190 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 LINC00574Q9H8X3 128 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 VCX3AQ9NNX9 186 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 NRN1Q9NPD7 142 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 C12orf4Q9NQ89 552 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 RAB22AQ9UL26 194 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 RAB26Q9ULW5 256 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 WASHC3Q9Y3C0 194 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 WSB1Q9Y6I7 421 aa2.67□□□□□ -1.98
NUP54-212ENST00000513248 EPPK1P58107 5090 aaKnown RBP2.66□□□□□ -1.98
NUP54-212ENST00000513248 MEGF8Q7Z7M0 2845 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 185.3 ms