RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 HINT2Q9BX68 163 aa9.11□□□□□ -0.95
C9orf3-220ENST00000489318 TMEM160Q9NX00 188 aa9.11□□□□□ -0.95
C9orf3-220ENST00000489318 PITPNC1Q9UKF7 332 aa9.11□□□□□ -0.95
C9orf3-220ENST00000489318 NAV3Q8IVL0 2385 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 IGHV7-81A0A0B4J1V7 117 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 MDFIC2A0A1B0GVS7 189 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 NCBP2LA6PVI3 153 aaKnown RBP9.1□□□□□ -0.95
C9orf3-220ENST00000489318 FNDC10F2Z333 226 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 M0QZK8 103 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 AMY1AP04745 511 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 MDKP21741 143 aaPredicted RBP9.1□□□□□ -0.95
C9orf3-220ENST00000489318 IER3P46695 156 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 CX3CL1P78423 397 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 DLK1P80370 383 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 CLINT1Q14677 625 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 FXYD3Q14802 87 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 ETV3LQ6ZN32 361 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 BCL6BQ8N143 479 aaPredicted RBP9.1□□□□□ -0.95
C9orf3-220ENST00000489318 LILRB2Q8N423 598 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 OR5R1Q8NH85 324 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 SCARB1Q8WTV0 552 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 ARPC1AQ92747 370 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 TMEM147Q9BVK8 224 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 ZNF469Q96JG9 3925 aaPredicted RBP9.1□□□□□ -0.95
C9orf3-220ENST00000489318 PLXNB1O43157 2135 aa9.1□□□□□ -0.95
C9orf3-220ENST00000489318 MAP1AP78559 2803 aaPredicted RBP9.09□□□□□ -0.95
C9orf3-220ENST00000489318 OR13C7P0DN81 318 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 AREGP15514 252 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 SNCAP37840 140 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 CRIP2P52943 208 aaPredicted RBP9.09□□□□□ -0.95
C9orf3-220ENST00000489318 GNB1P62873 340 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 KLK9Q2XQG4 91 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 ASPHD1Q5U4P2 390 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 OR8G2PQ6IF36 304 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 Q6YL49 198 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 SPNS3Q6ZMD2 512 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 OR1P1Q8NH06 330 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 RNASEH2CQ8TDP1 164 aaKnown RBP9.09□□□□□ -0.95
C9orf3-220ENST00000489318 ZNF48Q96MX3 618 aaPredicted RBP9.09□□□□□ -0.95
C9orf3-220ENST00000489318 P2RX4Q99571 388 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 RASL11BQ9BPW5 248 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 UBQLN2Q9UHD9 624 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 KLK9Q9UKQ9 250 aa9.09□□□□□ -0.95
C9orf3-220ENST00000489318 NPIPB5A8MRT5 1133 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 CRYGCP07315 174 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 SEC11BP0C7V7 166 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 SPP1P10451 314 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 CTRB1P17538 263 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 SUB1P53999 127 aaKnown RBP eCLIP9.08□□□□□ -0.96
C9orf3-220ENST00000489318 CTRB2Q6GPI1 263 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 ALKAL2Q6UX46 152 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 TMEM219Q86XT9 240 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 SSMEM1Q8WWF3 244 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 HSPB9Q9BQS6 159 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 WDR61Q9GZS3 305 aaKnown RBP9.08□□□□□ -0.96
C9orf3-220ENST00000489318 UQCC1Q9NVA1 299 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 ZNF580Q9UK33 172 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 FBXO7Q9Y3I1 522 aa9.08□□□□□ -0.96
C9orf3-220ENST00000489318 F11RQ9Y624 299 aaKnown RBP9.08□□□□□ -0.96
C9orf3-220ENST00000489318 UBE2L5PA0A1B0GUS4 154 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 RPS10-NUDT3A0A1W2PQS6 291 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 CORTO00230 105 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 CNIH1O95406 144 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 IFNA5P01569 189 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 IGHV4-59P01825 116 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 IFNA4P05014 189 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 EGR2P11161 476 aaPredicted RBP9.07□□□□□ -0.96
C9orf3-220ENST00000489318 MFAP2P55001 183 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 CD69Q07108 199 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 C19orf54Q5BKX5 351 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 EIF5AL1Q6IS14 154 aaKnown RBP9.07□□□□□ -0.96
C9orf3-220ENST00000489318 CENPVQ7Z7K6 275 aaPredicted RBP9.07□□□□□ -0.96
C9orf3-220ENST00000489318 TTC9CQ8N5M4 171 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 OR1L6Q8NGR2 347 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 SGMS2Q8NHU3 365 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 CACNG8Q8WXS5 425 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 GNPNAT1Q96EK6 184 aaPredicted RBP9.07□□□□□ -0.96
C9orf3-220ENST00000489318 TMEM68Q96MH6 324 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 PSMG3Q9BT73 122 aaPredicted RBP9.07□□□□□ -0.96
C9orf3-220ENST00000489318 VPREB3Q9UKI3 123 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 PAIP2BQ9ULR5 123 aaKnown RBP9.07□□□□□ -0.96
C9orf3-220ENST00000489318 WDR83OSQ9Y284 106 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 TIMM9Q9Y5J7 89 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 TEX15Q9BXT5 2789 aa9.07□□□□□ -0.96
C9orf3-220ENST00000489318 MYO9AB2RTY4 2548 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 ATP6V0E1O15342 81 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 FBXO24O75426 580 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 TSPAN9O75954 239 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 IGHG2P01859 326 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 ATP6V0CP27449 155 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 GPX4P36969 197 aaPredicted RBP9.06□□□□□ -0.96
C9orf3-220ENST00000489318 LY6EQ16553 131 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 ARSJQ5FYB0 599 aaPredicted RBP9.06□□□□□ -0.96
C9orf3-220ENST00000489318 CLLU1Q5K131 121 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 TREML4Q6UXN2 200 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 TMEM86BQ8N661 226 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 HSD17B11Q8NBQ5 300 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 TMED6Q8WW62 240 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 C22orf15Q8WYQ4 148 aa9.06□□□□□ -0.96
C9orf3-220ENST00000489318 TAF15Q92804 592 aaKnown RBP eCLIP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms