RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	TEX45	Q8NA69	505 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	OR4P4	Q8NGL7	312 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	OR4C13	Q8NGP0	309 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	OR1L8	Q8NGR8	309 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	OR10X1	Q8NGY0	326 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	FAM213B	Q8TBF2	198 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	H1FX	Q92522	213 aa	Known RBP	4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	LHX4	Q969G2	390 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	FLYWCH2	Q96CP2	140 aa	Known RBP	4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	CLCC1	Q96S66	551 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	CLEC7A	Q9BXN2	247 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	NDUFA4L2	Q9NRX3	87 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	KLF2	Q9Y5W3	355 aa	Predicted RBP	4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	KPTN	Q9Y664	436 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	CACNA1D	Q01668	2161 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	ARFGEF3	Q5TH69	2177 aa		4.46	□□□□□ -1.7
ATG4A-208	ENST00000489247	ROS1	P08922	2347 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	PCNX1	Q96RV3	2341 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	ITPR1	Q14643	2758 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	SMG1	Q96Q15	3661 aa	Known RBP	4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	PPIAL4C	A0A0B4J2A2	164 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	TEX50	A0A1B0GTY4	177 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	UBE2L5P	A0A1B0GUS4	154 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	OOSP1	A8MZH6	123 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	VWC2L	B2RUY7	222 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	C17orf112	F2Z3M2	114 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	LYNX1	G3V0Z9	82 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	BUB1B-PAK6	H3BSN5	160 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	C19orf84	I3L1E1	186 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	DNASE2	O00115	360 aa	Predicted RBP	4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	RBMXL2	O75526	392 aa	Known RBP	4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	SNAPIN	O95295	136 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	IGHV3-7	P01780	117 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	APOC3	P02656	99 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	SFTA3	P0C7M3	94 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	PPIAL4G	P0DN37	164 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	LYNX1	P0DP58	116 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	NPY1R	P25929	384 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	CD1B	P29016	333 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	MAS1L	P35410	378 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	OPRK1	P41145	380 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	HOXA1	P49639	335 aa	Predicted RBP	4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	RAB2A	P61019	212 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	RPL8	P62917	257 aa	Known RBP	4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	MRGPRG-AS1	Q2M3A8	158 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	KHDC3L	Q587J8	217 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	OR8G2P	Q6IF36	304 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	HCP5	Q6MZN7	132 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	ATRAID	Q6UW56	229 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	SSX9	Q7RTT3	188 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	VKORC1L1	Q8N0U8	176 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	RPP25L	Q8N5L8	163 aa	Known RBP	4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	ZNF114	Q8NC26	417 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	SLC24A4	Q8NFF2	622 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	CLDND2	Q8NHS1	167 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	HARBI1	Q96MB7	349 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247		Q96MF0	132 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	SRSF8	Q9BRL6	282 aa	Known RBP	4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	RSG1	Q9BU20	258 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	NPCDR1	Q9BY65	106 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	NKX6-2	Q9C056	277 aa	Predicted RBP	4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	SLC35B3	Q9H1N7	401 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	TREM1	Q9NP99	234 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	KCNIP2	Q9NS61	270 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	ZNRD1	Q9P1U0	126 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	FAM96B	Q9Y3D0	163 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	FBXO7	Q9Y3I1	522 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	OR51B2	Q9Y5P1	312 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	RFNG	Q9Y644	331 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	PKDREJ	Q9NTG1	2253 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	DYSF	O75923	2080 aa		4.45	□□□□□ -1.7
ATG4A-208	ENST00000489247	DSCAML1	Q8TD84	2053 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	LOC105371242	A0A075B767	164 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	CTXND1	A0A1B0GTU2	59 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247		A0A1W2PN81	502 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247		A0A1W2PPI3	338 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247		A1L4Q6	167 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	RBFOX3	A6NFN3	312 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	CGB1	A6NKQ9	187 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247		F8W036	122 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	RRH	O14718	337 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	SCO1	O75880	301 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	TSPAN9	O75954	239 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	CA2	P00918	260 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	IFNA10	P01566	189 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	IGKV1D-33	P01593	117 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	IGKV1-33	P01594	117 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	IGHV2-5	P01817	119 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	SRP19	P09132	144 aa	Known RBP	4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	RNASE2	P10153	161 aa	Known RBP	4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	EGR2	P11161	476 aa	Predicted RBP	4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	PAX1	P15863	534 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	FGF7	P21781	194 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	CHRNA7	P36544	502 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	GPX4	P36969	197 aa	Predicted RBP	4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	GPR6	P46095	362 aa	Predicted RBP	4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	RPL29	P47914	159 aa	Known RBP	4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	CCL20	P78556	96 aa		4.44	□□□□□ -1.7
ATG4A-208	ENST00000489247	DIAPH2-AS1	Q14236	149 aa		4.44	□□□□□ -1.7

Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms